Plant FIBer expression Database

Potri.014G143800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13970 218 / 2e-66 unknown protein
AT5G13310 98 / 3e-22 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G238100
[exp]
606 / 0 AT5G13970 204 / 2e-61 unknown protein
Potri.003G163100
[exp]
189 / 3e-55 AT5G13310 129 / 1e-33 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035116
[exp]
266 / 6e-85 AT5G13970 211 / 4e-64 unknown protein
Lus10031983
[exp]
209 / 5e-61 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF15264 TSSC4 Tumour suppressing sub-chromosomal transferable candidate 4
Representative CDS sequence
>Potri.014G143800.2 pacid=42764754 polypeptide=Potri.014G143800.2.p locus=Potri.014G143800 ID=Potri.014G143800.2.v4.1 annot-version=v4.1
ATGGAAGATAGTTTCAAAGTTCGAGTCGACAAGACCTTTGGCTCTCTCCCCTTTTCTTCTTCAGCGATACAAACCCAACAACCATCCTCCTCGTTAAGCT
CTCTATGGTGTCTCACTGACGAAGAAATCGAGCGAAACCAATGGAATCGAGACCACAAGGGTAGCCCTGAAACCGAAAGCCAACCCCAACCATACTTTAG
TCCAGAAAGACTCGACGATAAGAATTTGAACTCTGAGATCGGAAAAGACCTTGTTGATTTAGACGACGAGGACGAGGACGACGAGGTGGAGTCGTCGCGT
GCCTTGAAACTTAAACCTGAGGATTGTGATGACGAAGAATGGGACATCAAGAAATCTATTGGCCTGGATCGTACTCTTGATTACGAGGAAGAGGAAGATC
ATTATGACAAAGTGGCTGTTGGCAGGGAAGGGGCTGGAGATGATCGCCTGTACGTGACCCAAATGAATGATTATGGTAATGATGTGGATTCTGGCGATGT
GATGCCCATGCCCAGTTCATTCGGGGATGTCACGAGGGATCCGCGTGCTAATCACCTTGCTGCAAAAGTTAGGCTACTGGAAGATGCAGAAGCGGCTAAA
AAGATGGATTCTTTGCGAGTTACTGTAAAGGAAGATATCAGTGTATCTGATGATGGTAATCTGAAATCCATCCTGAAGAGGAAGGATGTTCAATCAGATT
CCAAGTCGATTAGCAACCACTTGGATTCAAAGTTACAAAAGCGTGTCCGGTTTGATCCGGAGTGCAAAGATGGTAATGATGAAGAGTCTGGTGGAGTTGA
AGACACACAGATGGAAACCACTGATTCGACAGAAGAAACACAGATATATCATTTGCCTCCAGATTATCCTTCTGGAATTCCAGATTATATGCGAAATCCT
TCCAAATACACGCGCTATACTTTTGACTCGGCAACCAATGTGGATGAAGAATCAAACCAAGAAGCTTACATGGACTTCCTCAAGATTCTGCAGAGACCAA
ATACAACAGAATCACATCCAGATGAGGTTCCTGTTGATCTGTCAAAACCTCTCACCTTCATACCAAAAAGGAAAACCAGTGGTGCTGCAGTGATTGATAA
CAGCATTGATTCTAAACAAAACCAGGATGATGCCAGTGAAGATTTCAAGCTTAGGAGAGGGTTACCTCTTGCGATTGCAGCTTTTGATGACAATGATACT
GAAACTTGTGCCATGGAGGAAGATAAACCGGAAACAGCAGCTGATAAAACTAATTCAAGCAGACCAGAACGCCAGTATAGGTCAAAGGCCAAGTCCGAGA
CATGA
AA sequence
>Potri.014G143800.2 pacid=42764754 polypeptide=Potri.014G143800.2.p locus=Potri.014G143800 ID=Potri.014G143800.2.v4.1 annot-version=v4.1
MEDSFKVRVDKTFGSLPFSSSAIQTQQPSSSLSSLWCLTDEEIERNQWNRDHKGSPETESQPQPYFSPERLDDKNLNSEIGKDLVDLDDEDEDDEVESSR
ALKLKPEDCDDEEWDIKKSIGLDRTLDYEEEEDHYDKVAVGREGAGDDRLYVTQMNDYGNDVDSGDVMPMPSSFGDVTRDPRANHLAAKVRLLEDAEAAK
KMDSLRVTVKEDISVSDDGNLKSILKRKDVQSDSKSISNHLDSKLQKRVRFDPECKDGNDEESGGVEDTQMETTDSTEETQIYHLPPDYPSGIPDYMRNP
SKYTRYTFDSATNVDEESNQEAYMDFLKILQRPNTTESHPDEVPVDLSKPLTFIPKRKTSGAAVIDNSIDSKQNQDDASEDFKLRRGLPLAIAAFDDNDT
ETCAMEEDKPETAADKTNSSRPERQYRSKAKSET

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G13970 unknown protein Potri.014G143800
[exp]
0 1
AT1G11320 unknown protein Potri.005G242900
[exp]
2.44 0.8489
AT4G38260 Protein of unknown function (D... Potri.004G206300
[exp]
2.64 0.8679
AT1G05600 EMB3101 EMBRYO DEFECTIVE 3101, Tetratr... Potri.002G179300
[exp]
2.82 0.8549
AT1G22220 AUF2 auxin up-regulated f-box prote... Potri.003G203000
[exp]
3.16 0.8583
AT1G80290 Nucleotide-diphospho-sugar tra... Potri.006G278400
[exp]
4.47 0.8172
AT1G14140 Mitochondrial substrate carrie... Potri.010G165900
[exp]
7.74 0.8550
AT1G03430 AHP5 histidine-containing phosphotr... Potri.006G098200
[exp]
7.74 0.8545 Pt-HPT3.2
AT4G24470 GATA GATA25, TIFY1, ... Zinc-finger protein expressed ... Potri.005G152800
[exp]
9.16 0.8300
AT4G35910 Adenine nucleotide alpha hydro... Potri.006G051300
[exp]
9.94 0.8422
AT5G49400 zinc knuckle (CCHC-type) famil... Potri.008G107100
[exp]
11.48 0.8015

Potri.014G143800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.