Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13960 706 / 0 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT2G22740 317 / 3e-97 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT2G35160 308 / 4e-94 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT1G73100 295 / 3e-90 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT5G04940 280 / 1e-84 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT4G13460 268 / 4e-80 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT2G33290 259 / 9e-77 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT1G17770 223 / 2e-63 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT2G24740 200 / 7e-55 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1) AT5G47150 115 / 5e-28 YDG/SRA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G237950 [exp] 1121 / 0 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G162801 [exp] 594 / 0 AT5G13960 529 / 8e-180 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G083100 [exp] 323 / 4e-98 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.001G036800 [exp] 285 / 2e-86 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.006G027600 [exp] 280 / 1e-84 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.016G025300 [exp] 278 / 5e-84 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.003G188700 [exp] 276 / 6e-83 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.010G064300 [exp] 271 / 4e-81 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.008G173100 [exp] 263 / 6e-78 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041515 [exp] 793 / 0 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10031984 [exp] 786 / 0 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10035115 [exp] 742 / 0 AT5G13960 716 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10001798 [exp] 437 / 2e-145 AT5G13960 446 / 8e-150 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10002571 [exp] 427 / 6e-142 AT5G13960 444 / 1e-149 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10040150 [exp] 305 / 1e-92 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10001011 [exp] 301 / 1e-89 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10008681 [exp] 288 / 1e-87 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10011011 [exp] 295 / 2e-87 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10029470 [exp] 281 / 1e-84 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [poplar] [flax] PUA PF02182 [poplar] [flax] SAD_SRA SAD/SRA domain CL0178 [poplar] [flax] PF05033 [poplar] [flax] Pre-SET Pre-SET motif
Representative CDS sequence Show only first row Show all	>Potri.014G143900.1 pacid=42763595 polypeptide=Potri.014G143900.1.p locus=Potri.014G143900 ID=Potri.014G143900.1.v4.1 annot-version=v4.1 ATGGTGGAGCAATGTGTGAGCAATGGACCGAAAAGGAAAGAGGTTGCTAAAAATGGCAAAAAAGAAAAGCAAAAGACAGAAGAAACAGAGACACAGAGGA GAACGAGTGATAGAATCAAGAGCAAGCAGAGAGAAGAGAAGGAACGATTGGTGAGAAAGAGAGTGCAGATATTAGACGAGCAAGAAGAAAAAGGAAACCT TAGAAAGAGATCAAATGCTAATGTGACCGAGGAGGAGGAGGTTGTAATGGCTGAAAAGTTGCTAAATCAGGTTTTGGGGTCAACTGAAAAGCAAAAGGAG GTGACTTTAAGTGATGCTGGTGGTGTGGGTAATGTGGTGACGGAGAAAAGTGCTACTGTTAAAGTTAAGGACACTTTGAGGTTGTTTAACAAGTTTTATC TACAGTTAGTGCAGGAAGAAGAGTTGAGGTGTGCAAAAGCGAAAGTTGATAAAAACGTCTCTAAAGGTTCAAAAAAGACCTCTAAAGGTTCAAAAAAATC AGTTGATAAATCCAAGAAAGAAAACACAGCTGAAGATGATAAGAAAAAATCCAAGCGTCCTGATTTAAAGGCAATATCCAAGATGATGGAAGCTAATGCT ATAATGTATCCTGAGAAAACAATTGGTGATCTTCCAGGTATCAATGTTGGGCACCGGTTCTATTCCAGAGCTGAAATGGTTGCTGTAGGTTTTCATAGCC ACTGGCTGAACGGAATTGATTATATGGGACAGTTCTACAAGAAAGGGGTGTACCATAACTATATGTTCCCACTTGCTGTAGCCATTGTTATTTCGGGGAT GTACGAGGATGATCTGGATAATGCTGAGGATGTTATCTATACTGGTCAAGGTGGTCATGATTTAACTGGAAATAAGCGTCAGATTCGTGACCAAAAGTTG GAGCGTGGTAATTTGGCATTGAAGAATTGTGTGGAGCAATGTGTTCCTGTGCGAGTTGTTCGAGGCCATGAATGTGCTAGCAGCTACTGTGGCAAAGTTT ACACCTATGATGGCTTGTACAAGGTTGTTCAATACTGGGCTGAGAAAGGTTTATCTGGATTTACTGTGTTTAAGTATCGACTGAGGCGGCTGGAAGGACA GCCACTTCTGACCACCAACCAGGTTCAATTCAGCTATGGACGTGTTCCCCAATCTGTTGCTGAAATACGAGGGTTGGTGTGTGAGGATATTAGTGGAGGT CAAGAGGATGTCCCGATTCCAGCTACAAATTTGGTTGATGATCCACCTGTTGCGCCGTCAGGTTATACCTACCGCAAGTCTCTTCAAATTGCAAAAAATG TGAAGCTTCCTACAAATGTGTCTGGATGCAACTGCAAAGGGACTTGTGTGGATCCAAGGACTTGTGCTTGTGCAAAACTTAATGGCTCTTATTTTCCATA TGTTAATTGTCATGGTGGCAGGCTAATTGAAGCCAGGGCTGTTGTTTTTGAATGTGGTCCTGGTTGTGGATGTGGACCTGGTTGTGTGAACCGAACATCT CAACGAGGCATCAAGCATCGTCTTGAGGTTTTCCGTACTCCTAAGAAAGGATGGGCTGTTAGATCATGGGACTTTCTACCTGCTGGGGCACCTGTCTGTG AGTACATAGGGGTACTTATGAGAACAGAAGACACAGATCATGTCTGCGAGAACAATTATATTTTTGACATTGATTGCTTGCAGACAATGAGGGGGCTAGA TGGAAGAGAGAGGCGACTGGGAGATGTATCAGTACCAGCAATTAACAACTTTGATGGAGATGATCAGAAGTCTGAAAGTGTTCCAGAGTTTTGTATTGAT GCAGGTTCCACTGGAAATATTGCCAGGTTCATCAATCATAGTTGTGAGCCCAATCTCTTCGTGCAATGTGTCCTAAGCTCACATCATGATGTCAAACTCG CTCGGGTGATGCTATTTGCAGCAGACAACATACCTCCTATGCAGGAGCTTACTTATGACTATGGCTATGCCCTGGATAGCGTCTCTGGCCCTGATGGAAA AATAATTCAGATGCCATGCTACTGTGGTGCAGCCGATTGTAGGAAGCGCTTGTTGTAG
AA sequence Show only first row Show all	>Potri.014G143900.1 pacid=42763595 polypeptide=Potri.014G143900.1.p locus=Potri.014G143900 ID=Potri.014G143900.1.v4.1 annot-version=v4.1 MVEQCVSNGPKRKEVAKNGKKEKQKTEETETQRRTSDRIKSKQREEKERLVRKRVQILDEQEEKGNLRKRSNANVTEEEEVVMAEKLLNQVLGSTEKQKE VTLSDAGGVGNVVTEKSATVKVKDTLRLFNKFYLQLVQEEELRCAKAKVDKNVSKGSKKTSKGSKKSVDKSKKENTAEDDKKKSKRPDLKAISKMMEANA IMYPEKTIGDLPGINVGHRFYSRAEMVAVGFHSHWLNGIDYMGQFYKKGVYHNYMFPLAVAIVISGMYEDDLDNAEDVIYTGQGGHDLTGNKRQIRDQKL ERGNLALKNCVEQCVPVRVVRGHECASSYCGKVYTYDGLYKVVQYWAEKGLSGFTVFKYRLRRLEGQPLLTTNQVQFSYGRVPQSVAEIRGLVCEDISGG QEDVPIPATNLVDDPPVAPSGYTYRKSLQIAKNVKLPTNVSGCNCKGTCVDPRTCACAKLNGSYFPYVNCHGGRLIEARAVVFECGPGCGCGPGCVNRTS QRGIKHRLEVFRTPKKGWAVRSWDFLPAGAPVCEYIGVLMRTEDTDHVCENNYIFDIDCLQTMRGLDGRERRLGDVSVPAINNFDGDDQKSESVPEFCID AGSTGNIARFINHSCEPNLFVQCVLSSHHDVKLARVMLFAADNIPPMQELTYDYGYALDSVSGPDGKIIQMPCYCGAADCRKRLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Potri.014G143900 [exp]	0	1
					Potri.018G126300 [exp]	1.00	0.8776
AT4G09570		CPK4, ATCPK4	calcium-dependent protein kina...		Potri.019G083200 [exp]	2.00	0.8562
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.002G152900 [exp]	3.00	0.8149
AT4G21070		ATBRCA1	ARABIDOPSIS THALIANA BREAST CA...		Potri.001G358100 [exp]	4.47	0.8659	Pt-ATBRCA1.1
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.002G121500 [exp]	6.24	0.8606	CYCA3.1
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103100 [exp]	6.70	0.8466
AT3G49000			RNA polymerase III subunit RPC...		Potri.015G144900 [exp]	7.34	0.8410
AT4G30860		SDG4, ASHR3	ASH1-related 3, SET domain gro...		Potri.018G102100 [exp]	10.24	0.8393
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Potri.003G001500 [exp]	14.49	0.8142	CLC.3
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.006G028200 [exp]	15.09	0.7022

Compare expression of checked genes

Potri.014G143900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.