Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19340 770 / 0 Protein of unknown function (DUF3754) (.1) AT5G13940 579 / 0 aminopeptidases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G237700 [exp] 871 / 0 AT3G19340 813 / 0.0 Protein of unknown function (DUF3754) (.1) Potri.014G144500 [exp] 676 / 0 AT3G19340 640 / 0.0 Protein of unknown function (DUF3754) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012581 [exp] 797 / 0 AT3G19340 787 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10031975 [exp] 768 / 0 AT3G19340 754 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10041512 [exp] 764 / 0 AT3G19340 756 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10035127 [exp] 758 / 0 AT3G19340 749 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10012584 [exp] 589 / 0 AT3G19340 589 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10041510 [exp] 570 / 0 AT3G19340 579 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10004371 [exp] 134 / 2e-33 AT5G47240 410 / 2e-139 nudix hydrolase homolog 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12576 [poplar] [flax] DUF3754 Protein of unknown function (DUF3754)
Representative CDS sequence Show only first row Show all	>Potri.014G144300.4 pacid=42762655 polypeptide=Potri.014G144300.4.p locus=Potri.014G144300 ID=Potri.014G144300.4.v4.1 annot-version=v4.1 ATGGAGAGGGAGAAGAAAGAGGTGATCAAATTGGAAAGGGAATCAGTAATCCCAATTCTGAAACCAAAGCTCATCATGACCTTGGCCAACCTCATTGAAC ATGGCTCTGACAGGGCGGAGTTTGTAAAACTATGTAAGAGAGTCGAGTACACCATACGAGCTTGGTATCTTCTGCAGTTTGAAGATTTGATGCAACTGTA TTCTCTCTTTGACCCTGTGTCCGGGGCTAAGAAATTGGAGCAGCAGAACCTATCTCCTACTGAAATTGATGTACTTGAACAGAATTTCCTAACTTACTTA TTTCAGGTGATGGATAAGAGCAACTTCAAGATAACAAGTGATGACGAGATTGAGGTTGCACTCTCTGGACAGTATCTTCTAAATGTTCCTATCAAAGTTG ATGAATCCAAGCTTGACAAGAAACTTTTGAAGACGTACTTTGCTGATCATCCTCATGAAAACCTCCCAGACTTTTCTGATAAGTACATTATCTTTCGGCG TGGGATTGGAATTGATAAAACAACTGATTATTTTGTCCTGGAGAAAGTGGACATGCTCATTGGACGTCTTTGGGGATCTCTTTTAAGAGTAACTCGGCTA GACAAAATTTTCGCAAGAAAGCCAAGGGGACAGCATAAGAAAGATTTAAAGAAGAACGATGACCTTAACTCCGAAGAAGATCAGGATGATTTATTTGTCG AAAGAATCCGACTGGAAAAAATGGATTTAAGTGTTAAAAATTTGCTGAGAAAGACTACAATACAAGAGCCTACATTTGATAGGATTATAGTCGTTTACAG GAGAGCAGCTCCAAAATCAAAAACAGAACGAGGGATATATGTGAAACATTTCAAAAACATTCCAATGGCTGATTTGGAAATAGTTCTTCCTGAAAAGAAA AACCCAGGGTTAACTCCAATGGACTGGGTCAAGTTCCTGGTTTCTGCTGTAGTTGGGCTGGTTGCTATGTCTGGTTCAGTTGAGATGCTTAAGGCTGATC TTTGGGTCATTTTTGCTGTCCTTTCCACAGTTGTTGGTTACTGTGCTAAAACATACTTCACATTTCAGCAAAATATGGCTTCATATCAGAACTTAACAAC ACAGTCCATGTATGATAAACAACTAGATAGTGGAAAGGGCACTCTTCTTCACCTGTGTGATGATGTGATTCAACAGGAAGTCAAAGAGGTTATCATGTCC TTCTTTATATTGATGGAACAGGGCAAAGCTACTAGGCAGGATTTGGATTTGCGTTGTGAGCAACTGATTAAAGAAGAGTTTGATGAGAGCTGTAATTTTG ATGTGGATGATGCAGTTGAAAAGTTGGAGAAGCTGGGCATCGTTGCTCGGGATTCTCTTGGACGATATTGTTGTGTTTCGCTAAGACGTGCTAATGAGAT TATTGGCACCACAACTGAAGAGCTCGTTCTCAAGGCACAGCAGGGTGTTATGACTAATCCTTGA
AA sequence Show only first row Show all	>Potri.014G144300.4 pacid=42762655 polypeptide=Potri.014G144300.4.p locus=Potri.014G144300 ID=Potri.014G144300.4.v4.1 annot-version=v4.1 MEREKKEVIKLERESVIPILKPKLIMTLANLIEHGSDRAEFVKLCKRVEYTIRAWYLLQFEDLMQLYSLFDPVSGAKKLEQQNLSPTEIDVLEQNFLTYL FQVMDKSNFKITSDDEIEVALSGQYLLNVPIKVDESKLDKKLLKTYFADHPHENLPDFSDKYIIFRRGIGIDKTTDYFVLEKVDMLIGRLWGSLLRVTRL DKIFARKPRGQHKKDLKKNDDLNSEEDQDDLFVERIRLEKMDLSVKNLLRKTTIQEPTFDRIIVVYRRAAPKSKTERGIYVKHFKNIPMADLEIVLPEKK NPGLTPMDWVKFLVSAVVGLVAMSGSVEMLKADLWVIFAVLSTVVGYCAKTYFTFQQNMASYQNLTTQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIMS FFILMEQGKATRQDLDLRCEQLIKEEFDESCNFDVDDAVEKLEKLGIVARDSLGRYCCVSLRRANEIIGTTTEELVLKAQQGVMTNP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19340			Protein of unknown function (D...		Potri.014G144300 [exp]	0	1
AT2G15695			Protein of unknown function DU...		Potri.009G103500 [exp]	1.41	0.8577
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.003G128500 [exp]	9.00	0.8039
AT4G29820		CFIM-25, ATCFIM...	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.006G146400 [exp]	14.49	0.8101
AT2G14910			unknown protein		Potri.001G298200 [exp]	14.59	0.8318
AT1G16180			Serinc-domain containing serin...		Potri.001G038100 [exp]	15.68	0.8158
AT4G37210			Tetratricopeptide repeat (TPR)...		Potri.005G130800 [exp]	16.00	0.8243
AT5G39410			Saccharopine dehydrogenase (....		Potri.004G126100 [exp]	17.14	0.8320
					Potri.014G052766 [exp]	18.16	0.7380
AT5G03450			Transducin/WD40 repeat-like su...		Potri.006G122800 [exp]	21.21	0.7515
AT1G74120			Mitochondrial transcription te...		Potri.018G051600 [exp]	21.90	0.8236

Compare expression of checked genes

Potri.014G144300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.