Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19340 639 / 0 Protein of unknown function (DUF3754) (.1) AT5G13940 622 / 0 aminopeptidases (.1) AT2G46915 92 / 2e-19 Protein of unknown function (DUF3754) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G237700 [exp] 674 / 0 AT3G19340 813 / 0.0 Protein of unknown function (DUF3754) (.1) Potri.014G144300 [exp] 663 / 0 AT3G19340 771 / 0.0 Protein of unknown function (DUF3754) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012581 [exp] 645 / 0 AT3G19340 787 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10012584 [exp] 640 / 0 AT3G19340 589 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10031975 [exp] 637 / 0 AT3G19340 754 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10035127 [exp] 632 / 0 AT3G19340 749 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10041510 [exp] 630 / 0 AT3G19340 579 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10041512 [exp] 616 / 0 AT3G19340 756 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10004371 [exp] 122 / 2e-29 AT5G47240 410 / 2e-139 nudix hydrolase homolog 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12576 [poplar] [flax] DUF3754 Protein of unknown function (DUF3754)
Representative CDS sequence Show only first row Show all	>Potri.014G144500.1 pacid=42763446 polypeptide=Potri.014G144500.1.p locus=Potri.014G144500 ID=Potri.014G144500.1.v4.1 annot-version=v4.1 ATGGGGAAGAAGAAGAAGAAAGACATAATACACTTGGAGAAGGAATCTGTGATTCCAATTCTCAAGCACAAGCTTATTGCTGCCTTAGCAAACCGCATTA GTATTGAACGTAGCAGATCTGATGTTGATGAGTTCCTGAAGCTCTGCCAGAGAGTTGAATACACAATTAGAGCTTGGTACCTTCTGCAATTTGAAGATCT CATGCGATTGTATTCCTTCTTTGAGCCTATTCATGGTGCTAAAAAACTGGAGCAGCAGAATCTCACTCCTGAAGAAATTGATGTTTTTGAACAGAATTTC TTAGCCTCCTTATTTCAGGTGATGGAAAAGAGTAATTTCAAAATTGCAACTGATGAGGAGATTGAAGTTGCACTCTCTGCACAATATCGGCTTAATCTAC CAATTGTGGTTAATGAAAATAAGCTTGACAAGAGGCTTTTTACAAGTTACTTTGCAGCGCATCCTCAGGATGACCTTCCATGCTTCGCTGATAAGTTCAT AATCTTTCGACGCGGCTTTGGAATTGATCATTTGAATAGTTACTTTATCATGCCGAAGATAAATACCATCATTTCCCGTTTCTGGAGATGTTTTCTAAAA GTAACAGGGTTAAAAAGACTTTTCTTCAGAAAGCGAAATGCGCATATTACCGAAGTTCCAAAATCTATTGAAATCAGCATGGATAACAGTGATGAAGGTT TATATGTTGAACGAATCCGCATCGAGAAAATAAAACTCAGCATATCTAATCTCCTGGGCAAGGTTACAATCCAAGAACCTACATTTGATCGAATAATTGT TGTTTACAGGCGAGCGAGTGCCAAAAAAGCAAGAGCACGGAATATTTATGTGAAGCATTTTAAGAGTATTCCAATGGCTGATATGGAGATAGTACTTCCA GAAAAGAAGAATCCTGGTTTAACTCCAGTGGATTGGGTTAAGTTCATTGTTTCTGCTGTGATTGGACTGATTACTGTAATTGGTTCGCTTAGCAATCCTA AAGCTGACATCCGGGTGATTCTCGCTATCCTGACATCAGTGGTTGGTTACTGTGTTAAAACATACTTCACATTCCAGAATAACTTGGTTTCATATCAGAG CTTAATCACACAGTCTGTGTATGACAAACAACTGGACAGTGGAAGGGGTACTCTTCTTCACTTGTGTGATGATGTGATTCAACAGGAAGTAAAAGAGGTG ATTGTTTCATTCTTTATCTTGATGGTACAAGGAAAAGCCACTAGACAGGAACTTGACCAGCGTTGTGAAGAACTCATTACTGAAGAATTCAATGAAAAAT GTAATTTCGATGTGGATGATGCACTTCAAAAGTTGCAGAAGTTAGGAATTGTTGCTAAGGATCCTGCCGGAAAGTACGCATGCACAGACTTGAAGCATGC TAATGAGATAATCGGAACCACAACAGAGGAGTTGGTGCTTAAAGCCAACCAAGGTGATAGCAGTTTTGGACGCTGA
AA sequence Show only first row Show all	>Potri.014G144500.1 pacid=42763446 polypeptide=Potri.014G144500.1.p locus=Potri.014G144500 ID=Potri.014G144500.1.v4.1 annot-version=v4.1 MGKKKKKDIIHLEKESVIPILKHKLIAALANRISIERSRSDVDEFLKLCQRVEYTIRAWYLLQFEDLMRLYSFFEPIHGAKKLEQQNLTPEEIDVFEQNF LASLFQVMEKSNFKIATDEEIEVALSAQYRLNLPIVVNENKLDKRLFTSYFAAHPQDDLPCFADKFIIFRRGFGIDHLNSYFIMPKINTIISRFWRCFLK VTGLKRLFFRKRNAHITEVPKSIEISMDNSDEGLYVERIRIEKIKLSISNLLGKVTIQEPTFDRIIVVYRRASAKKARARNIYVKHFKSIPMADMEIVLP EKKNPGLTPVDWVKFIVSAVIGLITVIGSLSNPKADIRVILAILTSVVGYCVKTYFTFQNNLVSYQSLITQSVYDKQLDSGRGTLLHLCDDVIQQEVKEV IVSFFILMVQGKATRQELDQRCEELITEEFNEKCNFDVDDALQKLQKLGIVAKDPAGKYACTDLKHANEIIGTTTEELVLKANQGDSSFGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19340			Protein of unknown function (D...		Potri.014G144500 [exp]	0	1
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Potri.009G114300 [exp]	6.63	0.8012
AT5G19640			Major facilitator superfamily ...		Potri.001G013400 [exp]	9.48	0.7592
AT4G31330			Protein of unknown function, D...		Potri.006G278000 [exp]	9.64	0.7926
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Potri.009G027300 [exp]	11.40	0.7839	MYB111.1,MYB023
AT4G04630			Protein of unknown function, D...		Potri.004G014000 [exp]	13.11	0.7921
AT4G21620			glycine-rich protein (.1.2)		Potri.004G036500 [exp]	16.73	0.7720
					Potri.006G250550 [exp]	21.93	0.7434
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Potri.019G031700 [exp]	24.55	0.7628
AT5G24030		SLAH3	SLAC1 homologue 3 (.1)		Potri.015G026700 [exp]	29.84	0.7514
AT3G47570			Leucine-rich repeat protein ki...		Potri.010G228300 [exp]	31.17	0.7725

Compare expression of checked genes

Potri.014G144500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.