Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02130 786 / 0 TOAD2, RPK2, CLI1 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) AT1G17230 424 / 9e-131 Leucine-rich receptor-like protein kinase family protein (.1) AT1G69270 405 / 1e-129 RPK1 receptor-like protein kinase 1 (.1) AT5G63930 414 / 8e-127 Leucine-rich repeat protein kinase family protein (.1) AT3G13380 391 / 9e-118 BRL3 BRI1-like 3 (.1) AT2G33170 390 / 1e-117 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G49670 384 / 1e-116 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 377 / 7e-114 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G44700 378 / 2e-112 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT2G01950 372 / 3e-111 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G096400 [exp] 783 / 0 AT3G02130 1140 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.017G094400 [exp] 772 / 0 AT3G02130 1405 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.004G120500 [exp] 767 / 0 AT3G02130 1375 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.011G139700 [exp] 409 / 4e-125 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G019900 [exp] 400 / 5e-123 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G169600 [exp] 395 / 4e-119 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.005G241500 [exp] 390 / 4e-119 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G075000 [exp] 395 / 9e-119 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.007G009200 [exp] 386 / 4e-117 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031976 [exp] 836 / 0 AT3G02130 531 / 2e-175 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10035126 [exp] 793 / 0 AT3G02130 450 / 4e-142 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10010087 [exp] 751 / 0 AT3G02130 962 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10007206 [exp] 748 / 0 AT3G02130 964 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10036899 [exp] 445 / 2e-143 AT3G02130 559 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10037083 [exp] 443 / 1e-142 AT3G02130 569 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10026666 [exp] 427 / 8e-137 AT3G02130 555 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10004646 [exp] 424 / 2e-135 AT3G02130 552 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10019248 [exp] 389 / 4e-118 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10013562 [exp] 381 / 1e-115 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.014G144600.1 pacid=42764618 polypeptide=Potri.014G144600.1.p locus=Potri.014G144600 ID=Potri.014G144600.1.v4.1 annot-version=v4.1 ATGGTAGTAGTAGCAGCAGCCTGGTTTCTCTTTGTTGGTGGCTTAGCAGCAACATTTTCAGCTGAAGCTCTCTCTTTTAATGACTCAACTAGTGGTACTC TCTTAAGTTTCAAGAATTCAGTTCTCGGGGACCCTTCAAATCTTCTCTCCTCCTGGAACCTGACTACCAATCCTGATTACTGCACCTGGTATGGTGTCAC CTGTCAAAAACCTTCTAACACTACTACAGAAGTAGTAGTTATAGCTTTGAACTTCTCTGGCACTTCCACTACTCGCCTTTCTGGAACTCTGCCGGAGTCC ATCCAAAACTTGCCCTACCTGCGAACTCTTGTCCTTTCTCACAACTGTTTTTCCGGTGAGATCCCAGCTGGTAGTATCGCCAAGCTGAGCTTCTTGGAGG TTTTGGAGCTTCAAGGGAACAATTTTTCGGGCAAGATTCCTCAACAGATAAGCACTGACCTTCACTCTCTTCGCTTCCTTAATTTGTCTTTTAATTCTTT CACTGGTGATATCCCTGCTACTTTGATTGGTTTTGGAAAGTTGAGAGTTATTGATTTGTCGAATAATAGGCTGACTGGTGGAATGCAACTTGTTAGTTTA AGTAAGTGCTTGTTTTTAAGGCACTTGAAGCTTTCTAATAATCTCTTGGAAAATAATATTCCAAAGGATATTGGTCATTGCAAGAACTTGAGGACTTTGT TGCTTGATGGGAACATTCTACAAGGTCCCATTCCAGCAGAGATAGGTCAGATTCCGGAACTTCGTGTTCTTGATGTTTCTACTAACAGTTTGACTCAGAC CATCCCCAAGGAGTTGGGTTATTGCAGGAAACTGTCTGTTCTTGTATTGACTAATTCAAGTAATTTTGTTGGTGATAATGGGGGGACTGGTGGTAACTTG GATGGTTTTAGATTAGAATTCAATGCTTTTGAAGGGGGTGTTCCTCAGGAGGTGTTGATGCTTCCGAGTTTGCAGATTTTGTGGGCGCCTAGGGCCAATC TTGATGGGCGGTTGCCTGACAATTGGAGTGACTCGTGCTCGCTGAGAGTTTTGCATTTGGGGCAGAATTCTCTCAGAGGTGTTGTGCCAAAGGGGCTGGT GATGTGCAAGAACCTTACTTTCTTGGATCTGAGTTCTAATTATTTGACTGGTGACCTGCCAATGCAGCTGCAAGTTCCTTGCATGATGTATTTCAATGTT AGTCAGAATAACATATCCGGTGCTGTTCCAACTTTTGGAAAAGGCAGTTGTGATACTAGCATAATCTCTTATGGTCAAGATCCTAATTTTTTTTATGTGG AGGATATACAGATTGCATACGCTAACATTCCTGTTTGGGGTTCCCATACCCTTTTGGGGTCCATGGCCGGTGCAGACTTCGTGATTGTCCATGATTTCAG TTGGAATCATTTTGTCGGTTCATTGCCTTCGTTCTCGGTGGGAGAAGAATTCTTGGTGAGTAAAAATAGAACTTCATACAGATTGTTACTGAGTAGTAAC GGGTTTACCGGGTCTCTTCCTGGTAAACTAGTTTCAAACTGTAATGATCTGCTGAGTTTCTCTGTTAACTTGAGTGCGAACCATATATCAGGTGAGATAC CAGATATGCTTCTCAATTGTCTACCAATAAGGGAATTTGAAGCAGCAGATAATGAGATCAGTGGTTTTCTAGCTCCCAGTATTGGCAACTTGAGAATGCT TCGATGTTTAGACTTGAGAAGAAACAGACTCTCTGGTTCTCTTCCTAATGAGTTGGGAAATTTGAGGTTTCTGAGATCAGTTCTTCTTGGAATGAACAAT TTAACAGGAGAAATTCCATCTGAATTCGGTCAATTGTCCTCTCTTACAGTTTTGGATCTTTCTCATAATGCTGTAACAGGATCTATACCTATGAGTTTGA CGAGCGCTAAGAACCTGGAGATTGTGTTACTCAATAACAATGATCTTTCTGGGGCGATACCTCCACCTTTCTCGAATATTTCCAGTCTCGTTGTCCTAAA TGTTTCTTTCAATAACCTCTCTGGTCATATACCCCACCTTCAACACCCAATTGATTGTGATTGGTTTAGAGGGAATATTTTTTTGGATAAGTGCTTGGAT CAATCCTCCAACACACCACCTGGAGAGGTTCAGCAGTCACATGGAGATAGAAAATGGCGCAATCACAGAAAGAAATCCTTTTTGATTGCAGTGGTGACTT CTGCTTCAGTTGTACTCTGTGTATCATTGGTTGTAGTTTTGTTCAGTTTTTATGGCAAGAAAAAGTCTTGGAGACTCTCTATCTTGAGGGGAAAAGTAGT TGTGACTTTTGCAGATGCTCCGGCTGAATTGACTTATGATAGTGTGGTCAGAGCTACTGGGAATTTCAGTATGAGAAACCTGATAGGTACAGGTGGCTTT GGGTCAACTTACAAAGCTGAATTGGTCCCAGGTTACTTCATAGCCGTAAAGAGGCTCTCCATTGGCAGATTTCAAGGCATTCAACAGTTTGATGCAGAGA TCAGAACATTGGGCAGAATTCGACACAAGAACCTTGTGACTCTGATTGGGTATTATGTGGCAGAGGCTGAAATGTTCTTAATTTACAACTATCTTTCTGG TGGAAACCTTGAAACCTTCATACATGACAGGCCAGACACAAATGTACAGTGGCCAGTGATTCACAAGATAGCTCTTGATATTGCACAAGCTCTAGCCTAC CTCCACTACTCATGCGCACCCCGCATTCTTCATCGTGACATCAAGCCTAGTAACATCCTGTTGGATGAGGAGCTTAACGCCTATCTGTCTGACTTTGGGT TGGCCAAACTTTTAGAAGTTTCTCAGACCCATGCCACTACAGATGTAGCAGGCACATTTGGGTATGTTGCACCAGAATATGCAACCACGTGCAGGGTATC TGACAAGTCAGATGTTTATAGCTTTGGGGTTGTGTTGTTGGAATTGATGTCAGGGAAGAAGTCTCTTGATCCATCATTTTCTGAGTATGGTAACGGTTTC AATATTGTTGCTTGGGCCAAGTTGTTGATCAAGGAGAGACGCTCCTCAGAGCTCTTTGCGCCAGAACTGTGGGAAGCAGGACCTAATGAGAATTTGTTGG GAATGTTAAAGCTTGCTTCAAGCTGCACAGTAGACTCACTTTCAGTGCGCCCATCCATGAAGCAGGTCCTTGAAAAACTGAAACAACTAAAACCATGA
AA sequence Show only first row Show all	>Potri.014G144600.1 pacid=42764618 polypeptide=Potri.014G144600.1.p locus=Potri.014G144600 ID=Potri.014G144600.1.v4.1 annot-version=v4.1 MVVVAAAWFLFVGGLAATFSAEALSFNDSTSGTLLSFKNSVLGDPSNLLSSWNLTTNPDYCTWYGVTCQKPSNTTTEVVVIALNFSGTSTTRLSGTLPES IQNLPYLRTLVLSHNCFSGEIPAGSIAKLSFLEVLELQGNNFSGKIPQQISTDLHSLRFLNLSFNSFTGDIPATLIGFGKLRVIDLSNNRLTGGMQLVSL SKCLFLRHLKLSNNLLENNIPKDIGHCKNLRTLLLDGNILQGPIPAEIGQIPELRVLDVSTNSLTQTIPKELGYCRKLSVLVLTNSSNFVGDNGGTGGNL DGFRLEFNAFEGGVPQEVLMLPSLQILWAPRANLDGRLPDNWSDSCSLRVLHLGQNSLRGVVPKGLVMCKNLTFLDLSSNYLTGDLPMQLQVPCMMYFNV SQNNISGAVPTFGKGSCDTSIISYGQDPNFFYVEDIQIAYANIPVWGSHTLLGSMAGADFVIVHDFSWNHFVGSLPSFSVGEEFLVSKNRTSYRLLLSSN GFTGSLPGKLVSNCNDLLSFSVNLSANHISGEIPDMLLNCLPIREFEAADNEISGFLAPSIGNLRMLRCLDLRRNRLSGSLPNELGNLRFLRSVLLGMNN LTGEIPSEFGQLSSLTVLDLSHNAVTGSIPMSLTSAKNLEIVLLNNNDLSGAIPPPFSNISSLVVLNVSFNNLSGHIPHLQHPIDCDWFRGNIFLDKCLD QSSNTPPGEVQQSHGDRKWRNHRKKSFLIAVVTSASVVLCVSLVVVLFSFYGKKKSWRLSILRGKVVVTFADAPAELTYDSVVRATGNFSMRNLIGTGGF GSTYKAELVPGYFIAVKRLSIGRFQGIQQFDAEIRTLGRIRHKNLVTLIGYYVAEAEMFLIYNYLSGGNLETFIHDRPDTNVQWPVIHKIALDIAQALAY LHYSCAPRILHRDIKPSNILLDEELNAYLSDFGLAKLLEVSQTHATTDVAGTFGYVAPEYATTCRVSDKSDVYSFGVVLLELMSGKKSLDPSFSEYGNGF NIVAWAKLLIKERRSSELFAPELWEAGPNENLLGMLKLASSCTVDSLSVRPSMKQVLEKLKQLKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Potri.014G144600 [exp]	0	1
AT5G06850			C2 calcium/lipid-binding plant...		Potri.006G058700 [exp]	1.00	0.8950
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.018G027300 [exp]	2.00	0.8662
AT1G22540			Major facilitator superfamily ...		Potri.013G106500 [exp]	4.89	0.8505
AT2G17480		ATMLO8, MLO8	MILDEW RESISTANCE LOCUS O 8, S...		Potri.007G064300 [exp]	11.40	0.8313	Pt-MLO8.2
AT1G74790			catalytics (.1)		Potri.015G067200 [exp]	12.04	0.8532
AT2G22590			UDP-Glycosyltransferase superf...		Potri.012G034100 [exp]	15.49	0.8614
AT1G34300			lectin protein kinase family p...		Potri.016G102700 [exp]	19.07	0.8225
AT4G31340			myosin heavy chain-related (.1...		Potri.006G076700 [exp]	19.89	0.8121
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.004G057900 [exp]	23.74	0.8661
AT1G71980			Protease-associated (PA) RING/...		Potri.019G082500 [exp]	26.07	0.8126

Compare expression of checked genes

Potri.014G144600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.