Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26700 440 / 2e-154 Protein kinase superfamily protein (.1) AT5G38560 186 / 7e-53 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G26150 179 / 6e-50 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT1G70450 172 / 6e-50 Protein kinase superfamily protein (.1) AT2G02800 172 / 1e-49 Kin2, APK2B protein kinase 2B (.1.2) AT3G46290 178 / 2e-49 HERK1 hercules receptor kinase 1 (.1) AT1G70460 177 / 2e-49 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G14370 171 / 3e-49 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT3G24550 175 / 5e-49 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G24540 172 / 7e-49 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G237600 [exp] 594 / 0 AT3G26700 445 / 2e-156 Protein kinase superfamily protein (.1) Potri.007G027000 [exp] 183 / 4e-52 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.005G124400 [exp] 179 / 6e-51 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.010G001600 [exp] 174 / 6e-50 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G234200 [exp] 178 / 1e-49 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.008G214200 [exp] 174 / 1e-49 AT5G18500 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G095900 [exp] 170 / 2e-49 AT1G24030 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G093700 [exp] 171 / 4e-49 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.008G145900 [exp] 169 / 4e-49 AT1G24030 587 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041509 [exp] 466 / 1e-164 AT3G26700 469 / 4e-166 Protein kinase superfamily protein (.1) Lus10012585 [exp] 440 / 8e-155 AT3G26700 426 / 2e-149 Protein kinase superfamily protein (.1) Lus10002882 [exp] 292 / 4e-96 AT3G26700 323 / 3e-108 Protein kinase superfamily protein (.1) Lus10024020 [exp] 182 / 5e-52 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10041734 [exp] 178 / 2e-50 AT2G18470 596 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10029187 [exp] 170 / 3e-49 AT1G24030 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10028140 [exp] 177 / 5e-49 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10022129 [exp] 176 / 5e-49 AT3G24550 474 / 3e-159 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10014318 [exp] 169 / 5e-49 AT2G18470 552 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10010703 [exp] 168 / 1e-48 AT1G24030 578 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.014G144800.1 pacid=42762499 polypeptide=Potri.014G144800.1.p locus=Potri.014G144800 ID=Potri.014G144800.1.v4.1 annot-version=v4.1 ATGTCAAGGACTCTTGCAGCCATATTGGGAGGTGCTGCAGGAGTCATGGCATTGGTGGGGGCAGTTATTTTTCTTCTATGGTGCCTTTCTCACAAAAAGA GCGTGTCAAGAACTTCAGAGACAGGATCTTCTGAAACATCTGTTCAAGGAAGGCATGCAGGGATTGAGTTGTCATTACAAGAAGCAAGGCGTTTTGAGAT GGAAGAATTGTCTCTGGCCACGAAAGGTTTTAGCGAGAAAAATTTGATGGGGTTTGGAAAGTTTGGGGAGGTATATAAGGGTTTGCTTAATAATGGGATG GTTGTAGCCATCAAAAAGAGACCTGGAGCTCCTAGTCCAGAATTCGTTGATGAGGTGCGCTACCTTTCACCTATTCAGCATCGGAATCTTGTGACTCTTT TGGGCTACTGCCAGGAAAATGACCTACAGTTTCTTGTATACGAGTATATCCCTAGTGGGAGCGTTTCCAATCACTTGTATGGACCTGGTCAAACTTTGGA TGGGAAGCTTGAATTCAAGCATAGGCTCTCAATCGCTCTAGGGGCTGCTAAAGGTTTGGCTCATCTTCACTCTCTATCTCCCCGTTTGGTGCACAAAAAT TTCAAAACAGCCAACGTTCTCGTGGATGAAAATTTCATTGCTAAAGTTGCAGATGCAGGACTTCGTAATTTCCTGGGAAAAGTTGATATTGCAGGCCCAT CTACGCAAGTGACATCAGATGAGATATTTCTTGCCCCAGAGGTGAGAGAGTTCAGGCGATTTTCTGAAAAAAGCGACGTGTTCAGTTTTGGTGTATTCCT TCTAGAGTTGCTAAGCGGCAAGGAGGCAGCAGAACCATCTCCAGGGACGAATCAAAATCTGGTTGAATGGGTCCAAAATACTCAGGACTACGCCAACTTT GCCAGCATTGTCGACCAAAGATTGGGGAGTAGCTTCACTGCTGAAGGTATGGAAGAGTTTATACAGTTGATGCTCCGATGTGTGGAACCTTCAAGTGAGA GACGACCAGCCATGAATTATGTGGTAATGGAACTTGATCGTATAATCGAGAAAGAGATGAACTTGACGACAGTCATGGGGGAAGGAACCCCAACGGTGAC CCTTGGAAGCCACTTATTCAGATCAGCCATATAA
AA sequence Show only first row Show all	>Potri.014G144800.1 pacid=42762499 polypeptide=Potri.014G144800.1.p locus=Potri.014G144800 ID=Potri.014G144800.1.v4.1 annot-version=v4.1 MSRTLAAILGGAAGVMALVGAVIFLLWCLSHKKSVSRTSETGSSETSVQGRHAGIELSLQEARRFEMEELSLATKGFSEKNLMGFGKFGEVYKGLLNNGM VVAIKKRPGAPSPEFVDEVRYLSPIQHRNLVTLLGYCQENDLQFLVYEYIPSGSVSNHLYGPGQTLDGKLEFKHRLSIALGAAKGLAHLHSLSPRLVHKN FKTANVLVDENFIAKVADAGLRNFLGKVDIAGPSTQVTSDEIFLAPEVREFRRFSEKSDVFSFGVFLLELLSGKEAAEPSPGTNQNLVEWVQNTQDYANF ASIVDQRLGSSFTAEGMEEFIQLMLRCVEPSSERRPAMNYVVMELDRIIEKEMNLTTVMGEGTPTVTLGSHLFRSAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26700			Protein kinase superfamily pro...		Potri.014G144800 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Potri.008G034000 [exp]	8.30	0.8346
AT5G19390			Rho GTPase activation protein ...		Potri.009G069700 [exp]	8.77	0.8000
AT1G32320		ATMKK10	MAP kinase kinase 10 (.1)		Potri.001G138800 [exp]	10.00	0.8113	Pt-ATMKK10.1
AT5G19390			Rho GTPase activation protein ...		Potri.001G275200 [exp]	18.33	0.7862
AT2G28250		NCRK	Protein kinase superfamily pro...		Potri.004G212600 [exp]	25.92	0.7953
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.004G007600 [exp]	27.38	0.8077
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.007G016400 [exp]	29.58	0.8085	CAld5H/F5H4,Pt-FAH1.4
AT5G03120			unknown protein		Potri.016G087000 [exp]	37.10	0.7814
AT3G01810			unknown protein		Potri.001G333200 [exp]	42.66	0.8073
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Potri.005G134900 [exp]	46.73	0.7839	LBD36.2

Compare expression of checked genes

Potri.014G144800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.