Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02060 1254 / 0 DEAD/DEAH box helicase, putative (.1.2) AT2G01440 210 / 1e-56 DEAD/DEAH box RNA helicase family protein (.1) AT5G14610 56 / 8e-08 DEAD box RNA helicase family protein (.1.2) AT3G01540 49 / 1e-05 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT3G09720 49 / 2e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G31970 48 / 2e-05 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT3G22330 47 / 4e-05 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT5G26742 47 / 6e-05 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT1G55150 46 / 8e-05 DEA(D/H)-box RNA helicase family protein (.1) AT2G47330 44 / 0.0007 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G237400 [exp] 1518 / 0 AT3G02060 1270 / 0.0 DEAD/DEAH box helicase, putative (.1.2) Potri.010G112500 [exp] 202 / 5e-54 AT2G01440 1177 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Potri.019G130900 [exp] 55 / 2e-07 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G000100 [exp] 53 / 1e-06 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.010G152400 [exp] 53 / 1e-06 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.013G158000 [exp] 52 / 2e-06 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.003G098800 [exp] 50 / 5e-06 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) Potri.017G071400 [exp] 50 / 5e-06 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.005G000500 [exp] 50 / 8e-06 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012587 [exp] 1202 / 0 AT3G02060 1231 / 0.0 DEAD/DEAH box helicase, putative (.1.2) Lus10041506 [exp] 1197 / 0 AT3G02060 1230 / 0.0 DEAD/DEAH box helicase, putative (.1.2) Lus10034589 [exp] 201 / 4e-56 AT2G01440 769 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Lus10030075 [exp] 55 / 2e-07 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10001074 [exp] 54 / 5e-07 AT3G58570 533 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10032135 [exp] 52 / 2e-06 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10014553 [exp] 50 / 1e-05 AT5G14610 833 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10001425 [exp] 49 / 2e-05 AT5G26742 859 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10032133 [exp] 49 / 2e-05 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10001057 [exp] 47 / 5e-05 AT5G26742 919 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0123 [poplar] [flax] HTH PF02559 [poplar] [flax] CarD_CdnL_TRCF CarD-like/TRCF domain
Representative CDS sequence Show only first row Show all	>Potri.014G145000.1 pacid=42764124 polypeptide=Potri.014G145000.1.p locus=Potri.014G145000 ID=Potri.014G145000.1.v4.1 annot-version=v4.1 ATGACTTCTCTTGACATATCCACACCTCTTATCTTCAAACTCAACTCCTCCACTAAGCTGCGGAGACTTTTCTCTGTGAAATTACCTTATCGCCACAACC ACAAACCATCATTTTCCCTCACCAATGCCGTCCGCACCCAAACAGCAGTTCCCTTTTCCAGCCGTACAGCCACCCCGAAGTACAAGATTGAGACGGAGCA GGACCCCATCTCCATCCTCAACGAGAGAATTCGCCGGCAACACCATGGAAAGAGAGAGGGCTCAAGGCCCATAATGGATTCTGAAGAGGCTGATCAGTAC ATACAGATGGTGAAAGAGCAGCAGCAGAGGGGATTGCAGAAGTTGAAAGGCGATAGGGTGGCAAAAGAAGGGGATGTTTTTAGTTACAAGGTGGATCCTT ATACACTTCGTTCTGGGGATTATGTTGTGCATAAGAAGGTGGGAATTGGGAGGTTTTTTGGCATTAAGTTTGATGTGCCAAAGGGTTCTTCAGAGGCTAT TGAATATGTGTTCATTGAATATGCTGATGGGATGGCTAAGCTTCCTGTTATGCAGGCTTCTCGTATGCTTTATCGATACAATCTCCCGAACGAAACGAAA AGGCCTCGGACATTGAGCAAATTGAGCGATACTGGTGCATGGGAAAGGAGAAAGACAAAGGGAAAGGTTGCAATACAGAAAATGGTGGTTGACTTAATGG AGCTGTATTTACATAGACTAAAACAAAGAAGACCTCCCTACCCAAAGACTCCTTTCATGGCTGAATTTGCTGCTCAATTTCCTTATGAGCCCACACCAGA CCAGAAGCTGGCTTTTATTGACGTTGAGAGGGATTTGAACCAGAGAGAAACTCCAATGGACCGATTAATCTGTGGAGATGTTGGGTTTGGTAAAACAGAA GTTGCTTTACGTGCTATCTTTTGCATTGTTTCAGCAGGAAAGCAAGCTATGGTTTTAGCACCAACAATTGTTCTGGCCAAACAACATTTTGATGTTATTT CAGAACGCTTTTCCAAGTATTCTCATATCAAGGTTGCACTTCTGAGTCGGTTTCAGAGTAAAGCAGAGAAAGAGATGTATTTGAACATGATTGAACATGG TCATTTGGACATTATCGTGGGCACTCATTCACTTCTTGGAAATCGTGTTGTGTATAACAACCTAGGCCTTCTTGTAGTGGATGAAGAACAGAGATTTGGT GTCAAACAGAAGGAGAAGATTGCTTCATTCAAAACTTCAGTTGATGTTCTTACTCTCTCTGCAACACCTATACCTCGAACACTTTATTTAGCATTGACTG GATTTCGGGATGCAAGTTTAATTTCAACTCCACCCCCAGAAAGAGTTCCTATAAAGACCCATCTGTCGGCATACAATAAAGATAAGCTAATATCAGCAAT CAAATATGAGCTGGACCGTGGTGGGCAAGTATTTTATGTCCTGCCTCGTATTAAAGGGCTGGAAGAAGTGAAGGATTTCCTTGAACAATCATTTCCAAAT GTAGAAATAGCTGTTGCACATGGGCAGCAATATTCAAAGCAGCTTGAGGACACCATGGAGCAATTTGCACAAGGTGAAATTAAGATTCTTATATGCACAA ATATAGTAGAAAGTGGGCTTGATATTCAAAACGCAAATACCATCATAATTCAAGATGTTCAGCTATTTGGTCTAGCTCAATTGTATCAGTTACGTGGAAG AGTGGGCAGGGCAGATAAGGAAGCTCACGCGCATTTATTTTACCCTGACAAGTCAATGTTAACTGATCAGGCGCTGGAGAGGCTAGCAGCTCTGGAAGAA TGCCGAGAACTTGGCCAAGGTTTCCAACTTGCAGAGAGAGACATGGGTATAAGAGGCTTTGGTACCATCTTCGGTGAGCAACAGACTGGGGATGTCGGGA ATGTTGGAGTTGATTTCTTCTTCGAAATGCTTTTTGAAAGTTTGTCCAAGGTTGATGAGCACAGGGTAATTTCAGTTCCTTACCAGTCAGTACAGATTGA TTTAAATATAAACCCTCATCTCCCTTCTGACTACATAAATTATTTGGAGAACCCCATGGAAATTATTAATGAAGCTGAGAAAGCTGCAGAGACAGATATA TGGAGTTTGATGCAATTTACAGAAAATCTGCGTCGCCAGTATGGAAAAGAGCCTAGCTCCATGGAAATTATATTGAAGAAGCTTTATGTAAGGAGAATGG CAGCAGATATTGGGATAACAAGAATTTATGCATCTGGAAAGATGGTTGGCATGGAAACAAATATGAGTAAAAAGGTTTTTAAGCTGATGACAGATTCAAT GTCATCTGAAATGCATAGAAACTCTTTGTTTTTTGATGGAAACGAAATAAAGGCTGAACTTCTTTTGGAGCTACCGAGAGCACAACTGCTAAATTGGATC TTTCAATGCATAGCAGAACTCCATGCTTGCCTGCCTGCCCTTATAAAATACTAG
AA sequence Show only first row Show all	>Potri.014G145000.1 pacid=42764124 polypeptide=Potri.014G145000.1.p locus=Potri.014G145000 ID=Potri.014G145000.1.v4.1 annot-version=v4.1 MTSLDISTPLIFKLNSSTKLRRLFSVKLPYRHNHKPSFSLTNAVRTQTAVPFSSRTATPKYKIETEQDPISILNERIRRQHHGKREGSRPIMDSEEADQY IQMVKEQQQRGLQKLKGDRVAKEGDVFSYKVDPYTLRSGDYVVHKKVGIGRFFGIKFDVPKGSSEAIEYVFIEYADGMAKLPVMQASRMLYRYNLPNETK RPRTLSKLSDTGAWERRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPKTPFMAEFAAQFPYEPTPDQKLAFIDVERDLNQRETPMDRLICGDVGFGKTE VALRAIFCIVSAGKQAMVLAPTIVLAKQHFDVISERFSKYSHIKVALLSRFQSKAEKEMYLNMIEHGHLDIIVGTHSLLGNRVVYNNLGLLVVDEEQRFG VKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTHLSAYNKDKLISAIKYELDRGGQVFYVLPRIKGLEEVKDFLEQSFPN VEIAVAHGQQYSKQLEDTMEQFAQGEIKILICTNIVESGLDIQNANTIIIQDVQLFGLAQLYQLRGRVGRADKEAHAHLFYPDKSMLTDQALERLAALEE CRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGVDFFFEMLFESLSKVDEHRVISVPYQSVQIDLNINPHLPSDYINYLENPMEIINEAEKAAETDI WSLMQFTENLRRQYGKEPSSMEIILKKLYVRRMAADIGITRIYASGKMVGMETNMSKKVFKLMTDSMSSEMHRNSLFFDGNEIKAELLLELPRAQLLNWI FQCIAELHACLPALIKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02060			DEAD/DEAH box helicase, putati...		Potri.014G145000 [exp]	0	1
AT2G39670			Radical SAM superfamily protei...		Potri.008G056500 [exp]	1.00	0.9686
AT2G31840		MRL7-L	Mesophyll-cell RNAi Library li...		Potri.007G145700 [exp]	3.46	0.9572
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Potri.005G197900 [exp]	4.47	0.9569
AT5G14460			Pseudouridine synthase family ...		Potri.001G343100 [exp]	4.58	0.9426
AT5G55580			Mitochondrial transcription te...		Potri.001G361800 [exp]	6.00	0.9500
AT5G57180		CIA2	chloroplast import apparatus 2...		Potri.018G142100 [exp]	11.61	0.9524
AT5G02860			Pentatricopeptide repeat (PPR)...		Potri.009G092100 [exp]	11.74	0.9415
AT2G22360			DNAJ heat shock family protein...		Potri.005G073900 [exp]	12.56	0.9607
AT5G01590			unknown protein		Potri.016G123900 [exp]	14.49	0.9502
AT1G53800			unknown protein		Potri.001G161900 [exp]	17.17	0.9292

Compare expression of checked genes

Potri.014G145000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.