Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46860 263 / 2e-88 SGR3, ATVAM3, ATSYP22, VAM3 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) AT5G16830 218 / 2e-70 ATSYP21, ATPEP12, SYP21, PEP12P syntaxin of plants 21 (.1) AT4G17730 208 / 1e-66 ATSYP23, SYP23 syntaxin of plants 23 (.1.2) AT1G32270 145 / 7e-41 ATSYP24 SYNTAXIN 24, syntaxin, putative (.1) AT3G05710 51 / 3e-07 ATSYP43, SYP43 syntaxin of plants 43 (.1.2) AT3G03800 50 / 4e-07 ATSYP131, SYP131 syntaxin of plants 131 (.1) AT5G26980 50 / 6e-07 ATSYP41, ATTLG2A, SYP41 syntaxin of plants 41 (.1.2) AT2G18260 49 / 9e-07 ATSYP112, SYP112 syntaxin of plants 112 (.1) AT3G52400 49 / 2e-06 ATSYP122, SYP122 syntaxin of plants 122 (.1) AT3G11820 48 / 3e-06 PEN1, AT-SYR1, ATSYR1, ATSYP121, SYP121 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G095300 [exp] 254 / 8e-85 AT5G46860 368 / 2e-129 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.001G138500 [exp] 249 / 7e-83 AT5G46860 377 / 3e-133 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.005G020800 [exp] 55 / 2e-08 AT3G05710 462 / 1e-164 syntaxin of plants 43 (.1.2) Potri.013G011100 [exp] 54 / 4e-08 AT3G05710 457 / 7e-163 syntaxin of plants 43 (.1.2) Potri.016G068600 [exp] 50 / 4e-07 AT3G11820 421 / 5e-149 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.007G023100 [exp] 49 / 1e-06 AT2G18260 352 / 3e-122 syntaxin of plants 112 (.1) Potri.006G202200 [exp] 49 / 2e-06 AT3G11820 412 / 3e-145 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.019G036700 [exp] 47 / 4e-06 AT3G03800 391 / 1e-137 syntaxin of plants 131 (.1) Potri.002G200400 [exp] 47 / 9e-06 AT5G26980 397 / 1e-139 syntaxin of plants 41 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030953 [exp] 251 / 3e-83 AT5G46860 417 / 9e-149 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10040094 [exp] 251 / 3e-83 AT5G46860 419 / 1e-149 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10000311 [exp] 151 / 1e-45 AT5G46860 217 / 5e-72 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10011064 [exp] 154 / 4e-42 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10029864 [exp] 52 / 1e-07 AT3G05710 510 / 0.0 syntaxin of plants 43 (.1.2) Lus10013589 [exp] 50 / 1e-06 AT3G11820 437 / 2e-155 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10021263 [exp] 50 / 1e-06 AT3G11820 436 / 3e-154 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10016173 [exp] 49 / 1e-06 AT3G11820 432 / 2e-152 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10020683 [exp] 49 / 2e-06 AT3G05710 361 / 7e-126 syntaxin of plants 43 (.1.2) Lus10029373 [exp] 49 / 2e-06 AT3G11820 441 / 4e-157 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [poplar] [flax] SNARE SNARE domain CL0445 [poplar] [flax] SNARE-fusion PF14523 [poplar] [flax] Syntaxin_2 Syntaxin-like protein
Representative CDS sequence Show only first row Show all	>Potri.014G145200.1 pacid=42763647 polypeptide=Potri.014G145200.1.p locus=Potri.014G145200 ID=Potri.014G145200.1.v4.1 annot-version=v4.1 ATGAGCTTCCAAGATTTTCAAAATGGCAAGAGACCTTCCTCCAGTTCTTCCACTTCCAGAAGCCCATCCCAAGCGGTGGCGGCCGGTATTTTCCAAATCA ACACAGCCGTTGCCGGCTTCCGTCGTCTTGTCGATGCCATCGGAACCGACAAGGACACTCCTGAACACCGACATAAACTGCATAATTCAAGGCAACGGAT TCTGCAGTTAGTTAAAGAGACTTCTGCTAAACTCAAGTCGTTGAGCGAACTCGACCACGATCCTGACATCAATCCGAGCAAGAAAATTGAAGATGCGAAG CTAGCAAGAGATTTTCAAATCACATTGCAAGAGTTCCAGAAAGTCCAACAGCTTGCCTCTGAGCGCGAGTCCACTTACTCTCCTTCTCTACCTCCTCAAT CTTCTTTGCCTCCTTCCTCTGGCTCTGGTGAATATGTGATCGCTAGTATGGATCAAGATAACCAACCTTTTTTAAGGGAACAGAGAAGGCAGGAGGTAAT ACTTCTGGATAATGAAGTCGCATTTAATGAAGCCATAATTGAGGAAAGGGAACAGGGTATTAGAGACATAGAGGAACAAATTGGAGAAGCAAATGAAATA TTCAAGGATCTTGCTGTTCTAGTTCATGACCAGGGTGTGGTTATTGATGATATTCACTCAAACATTGATTCTTCTGCTACTGCAACAACGCAAGCAAGAG TTCAGCTATCCAAGGCTTCGAAAACCGTGAAATCTAAATGCTCATGGTGCTGGTGGCTACTGGGAATTGCTGTCGTTGTACTCGTTGTCCTTCTCCTCAT CCTCATTTTATAG
AA sequence Show only first row Show all	>Potri.014G145200.1 pacid=42763647 polypeptide=Potri.014G145200.1.p locus=Potri.014G145200 ID=Potri.014G145200.1.v4.1 annot-version=v4.1 MSFQDFQNGKRPSSSSSTSRSPSQAVAAGIFQINTAVAGFRRLVDAIGTDKDTPEHRHKLHNSRQRILQLVKETSAKLKSLSELDHDPDINPSKKIEDAK LARDFQITLQEFQKVQQLASERESTYSPSLPPQSSLPPSSGSGEYVIASMDQDNQPFLREQRRQEVILLDNEVAFNEAIIEEREQGIRDIEEQIGEANEI FKDLAVLVHDQGVVIDDIHSNIDSSATATTQARVQLSKASKTVKSKCSWCWWLLGIAVVVLVVLLLILIL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Potri.014G145200 [exp]	0	1
AT5G01020			Protein kinase superfamily pro...		Potri.006G113600 [exp]	1.00	0.7484
AT5G58010	bHLH	LRL3, bHLH082	LJRHL1-like 3 (.1)		Potri.006G135600 [exp]	4.89	0.7387
AT4G34660			SH3 domain-containing protein ...		Potri.001G128800 [exp]	12.84	0.6770
AT3G56810			unknown protein		Potri.016G024600 [exp]	13.07	0.7173
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.005G098900 [exp]	13.96	0.7062
AT5G58490			NAD(P)-binding Rossmann-fold s...		Potri.009G076300 [exp]	14.96	0.7071	Pt-CCR.7
AT2G45530			RING/U-box superfamily protein...		Potri.001G452800 [exp]	17.66	0.6882
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.008G112600 [exp]	18.16	0.7020
AT3G26935			DHHC-type zinc finger family p...		Potri.003G160600 [exp]	24.73	0.6939
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.010G197600 [exp]	27.12	0.6603	Pt-TOPP4.1

Compare expression of checked genes

Potri.014G145200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.