Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26730 623 / 0 RING/U-box superfamily protein (.1) AT2G23780 50 / 1e-06 RING/U-box superfamily protein (.1) AT3G58030 51 / 2e-06 RING/U-box superfamily protein (.1.2.3.4) AT2G42030 50 / 4e-06 RING/U-box superfamily protein (.1) AT1G19310 49 / 4e-06 RING/U-box superfamily protein (.1) AT1G74990 45 / 2e-05 RING/U-box superfamily protein (.1) AT4G28270 45 / 6e-05 ATRMA2 RING membrane-anchor 2 (.1) AT4G27470 45 / 7e-05 ATRMA3 RING membrane-anchor 3 (.1) AT4G03510 44 / 0.0002 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT5G05130 45 / 0.0003 DNA/RNA helicase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G193600 [exp] 53 / 6e-07 AT3G58030 389 / 2e-132 RING/U-box superfamily protein (.1.2.3.4) Potri.016G058300 [exp] 52 / 9e-07 AT3G58030 331 / 7e-110 RING/U-box superfamily protein (.1.2.3.4) Potri.005G127900 [exp] 50 / 2e-06 AT2G23780 234 / 3e-78 RING/U-box superfamily protein (.1) Potri.004G042700 [exp] 49 / 5e-06 AT4G03510 157 / 1e-47 RING membrane-anchor 1 (.1.2) Potri.007G031600 [exp] 49 / 6e-06 AT2G23780 227 / 4e-75 RING/U-box superfamily protein (.1) Potri.001G401600 [exp] 49 / 7e-06 AT4G27470 205 / 5e-66 RING membrane-anchor 3 (.1) Potri.011G051800 [exp] 48 / 8e-06 AT4G27470 163 / 8e-50 RING membrane-anchor 3 (.1) Potri.011G120800 [exp] 48 / 1e-05 AT4G27470 167 / 7e-51 RING membrane-anchor 3 (.1) Potri.014G040400 [exp] 47 / 1e-05 AT1G19310 226 / 4e-75 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031993 [exp] 698 / 0 AT3G26730 612 / 0.0 RING/U-box superfamily protein (.1) Lus10035163 [exp] 687 / 0 AT3G26730 610 / 0.0 RING/U-box superfamily protein (.1) Lus10022492 [exp] 52 / 7e-07 AT2G23780 241 / 1e-80 RING/U-box superfamily protein (.1) Lus10016796 [exp] 51 / 8e-07 AT2G23780 242 / 3e-81 RING/U-box superfamily protein (.1) Lus10033697 [exp] 50 / 2e-06 AT4G03510 149 / 1e-44 RING membrane-anchor 1 (.1.2) Lus10021063 [exp] 50 / 4e-06 AT3G58030 362 / 1e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10016255 [exp] 50 / 6e-06 AT3G58030 362 / 2e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10029292 [exp] 50 / 7e-06 AT3G58030 374 / 6e-127 RING/U-box superfamily protein (.1.2.3.4) Lus10016303 [exp] 48 / 8e-06 AT1G19310 268 / 2e-91 RING/U-box superfamily protein (.1) Lus10010791 [exp] 48 / 9e-06 AT1G19310 266 / 1e-90 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13923 [poplar] [flax] zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.014G145300.4 pacid=42762565 polypeptide=Potri.014G145300.4.p locus=Potri.014G145300 ID=Potri.014G145300.4.v4.1 annot-version=v4.1 ATGTCCATCTTGCCTACACAAGTCCAAGGTTCCGCATCGTCATCTTCGCTTGAATCTCCTCCTCTAAACCCTAGTTACTCCAGTCATGGCTCTCCTCCAC AATCTCGCTCCCCTCTCTCCCTCCAATCCCAGATTCAGCCTCAGTCTCAGCACCTCTCTGGCGAATCGGCTCCAGTTACAGAAGATTCTGCCGGATCCTC CGCAGAGGTGAATGAATTAGGGACACCAATTAGTAAAAGAAGTTGGGCCCACCAAAATGCACTCACAAATTCTCCGTCTCAGTCAGGTGGTGGAGGGGTT GGATGTGTCCAGTCTAAAGGAAATATGTTAGGAAACATTGCCTCTCCTCAAAGTCAACAAAGTGTTGGGTCTGTCAACTCTCGAGGAGGAACTACACATG CTTCAGGAAGAAGAGCCCAGATGACTAATGCCAATCATTTGCTCAATTTTCATTATGACCCCATTTCTCGTCCTCAACCAAGGGCTCCTCCTCCAAGACG ACCACAAAAGAAAAGGGCTTACAACAAGGATTTGTTCCTTCAGGCTAATTACAAGTTCGTTGTGTTAGATACTGGAAGCTATGCTCCTGAATCAATGGAT CCAGATAAAATGCTTAAATGGGAGGACATAATTTGTGTTAGGTATTCCACCACATTTCCAGTGCAGTGTCCAATTTGCCTGGAATATCCTCTATGCCCAC AGATAACTTCTTGTGGACATATTTTTTGTTTTCCCTGTATTCTTCGTTACTTGTTAATGGGCGAGGAGGATCATAAAGGCGATTGCTTCAAAAGATGCCC CCTATGTTTTGTGATGATATCTCCAAAAGATCTGTACACCATCTATATTGAGAAAGTCAAGCAGTATTGCATTGGTGAAACTATAGAGTTCATGCTTCTA ACTCGACAAAAACATTCTTTCGTTCCATCAATGAAAATTGAACCAGAAGCAGACACTGAACTGTGTAGCAACGATAACATCTATGATCCCTTCTCAAAGT TCACTTTCACTTCAGATGTGGAATTGTCAGTAAGAAAAGCAATATCAGATTTGGATAGTTGGTTAGTCAGAGCAGATTCGGGTCTTGTGGATGATTTAGA GAAGCTTCCATATGTTTGCGCTGCAATGGAGCAGTTAGAAAAGAGGAAGAAGTATTGGAATGAGCAGAAGGCATGCCATGATGATAGATTCAATGTTAGC AACAGTCAGAAAGGATCTCAAGGGCTTTTGTCATCTTTAACTACTGCTAAAGGTGAGCACAAAGCCTGTAGTTCTAGATCTGCAACACCATCTATTGATA TCAATAACAAAAATAAGGGGTCTGATAATGTGATGGGGGATGTGGTTGAGTCACCAGAAGATGAAGATAGTGCTTTATCATCCTCATATGAAGAAAATAA GAATTTCCAGACACATGCAAATGGTTATAGAGATGTTAAGGATAAGGAGTCGTACAATTTCTACCAGGCAATTGATGGTCAGCACCTCATTCTTCACCCA TTGAACATGAAGTGTCTTCTGCACCATTATGGGAGCTATGATTTGCTACCTCACAGAGTAAGTGGAACAATCTTGCAGTTGGAGACAATTACCCAGTCAG AGGCCATGAGAAGGCGCTACCGTTATTTAAGTCACTTTTCATTGACAACAACATTTCAGCTGTGTGAAATTGATTTGAATGCTGCACTACCTCCCAATGC CCTGCTTCCATTCATGGATGAAATCAAGAAACGTGAAAAGCTGCGGAAGCAACTTGCCAACAAGGAACGGAAGGAGAAGATCAAGGCTGAAGCTTCTGCT TCTATGCCCACTTTACCCAGTTTTGGACAGTCCTCTTATGACACCTCCCCAAATTTCTCTATGGAAGACTTTGAAGCCCTGGGTATTTCTTCCTCAATGT CATCTAGCCCTCCAGTTGCAGGGGAGAGGATACTGTTCTCAAATGTTGCAAGGTTTGGTTTTGCTGCTGGACACGATTCTCCAGCCTTGAAAATTGAGGA AAATGTTCCTCTACAAAATAACATGCCAGGAAACAATTCTTCCAATTTAAATGGTTCAAGAAATTCAGGCCCATCATCGTTTGCCAATGTAACAGCCAGA CCAAAACCTGAAGAAAATGTTGATCAGCCAAAGATGAATGAGGTTAGTAAGAAAGGGAAGAAACCAAATCGAGTCCTCTTATCAACAACTGGTGGTCGGC GCTACTGA
AA sequence Show only first row Show all	>Potri.014G145300.4 pacid=42762565 polypeptide=Potri.014G145300.4.p locus=Potri.014G145300 ID=Potri.014G145300.4.v4.1 annot-version=v4.1 MSILPTQVQGSASSSSLESPPLNPSYSSHGSPPQSRSPLSLQSQIQPQSQHLSGESAPVTEDSAGSSAEVNELGTPISKRSWAHQNALTNSPSQSGGGGV GCVQSKGNMLGNIASPQSQQSVGSVNSRGGTTHASGRRAQMTNANHLLNFHYDPISRPQPRAPPPRRPQKKRAYNKDLFLQANYKFVVLDTGSYAPESMD PDKMLKWEDIICVRYSTTFPVQCPICLEYPLCPQITSCGHIFCFPCILRYLLMGEEDHKGDCFKRCPLCFVMISPKDLYTIYIEKVKQYCIGETIEFMLL TRQKHSFVPSMKIEPEADTELCSNDNIYDPFSKFTFTSDVELSVRKAISDLDSWLVRADSGLVDDLEKLPYVCAAMEQLEKRKKYWNEQKACHDDRFNVS NSQKGSQGLLSSLTTAKGEHKACSSRSATPSIDINNKNKGSDNVMGDVVESPEDEDSALSSSYEENKNFQTHANGYRDVKDKESYNFYQAIDGQHLILHP LNMKCLLHHYGSYDLLPHRVSGTILQLETITQSEAMRRRYRYLSHFSLTTTFQLCEIDLNAALPPNALLPFMDEIKKREKLRKQLANKERKEKIKAEASA SMPTLPSFGQSSYDTSPNFSMEDFEALGISSSMSSSPPVAGERILFSNVARFGFAAGHDSPALKIEENVPLQNNMPGNNSSNLNGSRNSGPSSFANVTAR PKPEENVDQPKMNEVSKKGKKPNRVLLSTTGGRRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26730			RING/U-box superfamily protein...		Potri.014G145300 [exp]	0	1
AT2G36480			ENTH/VHS family protein (.1.2....		Potri.006G115600 [exp]	1.73	0.9239
AT5G22450			unknown protein		Potri.010G238400 [exp]	3.16	0.9151
AT3G56680			Single-stranded nucleic acid b...		Potri.010G237500 [exp]	3.74	0.8957
AT1G15780			unknown protein		Potri.003G012400 [exp]	3.87	0.9105
AT3G21290			dentin sialophosphoprotein-rel...		Potri.003G033100 [exp]	5.65	0.9042
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Potri.016G043500 [exp]	6.92	0.8951	CHR929
AT1G15780			unknown protein		Potri.001G204900 [exp]	7.07	0.9035
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Potri.003G031900 [exp]	9.94	0.8944	Pt-EMB177.4
AT4G16280		FCA	RNA binding;abscisic acid bind...		Potri.010G147900 [exp]	10.95	0.8978
AT4G31880			unknown protein		Potri.006G263300 [exp]	12.24	0.8893

Compare expression of checked genes

Potri.014G145300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.