Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08660 777 / 0 MGP2 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2) AT3G48820 352 / 2e-117 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2) AT1G08280 49 / 5e-06 Glycosyltransferase family 29 (sialyltransferase) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G104100 [exp] 349 / 1e-116 AT3G48820 730 / 0.0 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2) Potri.004G184200 [exp] 55 / 5e-08 AT1G08280 467 / 1e-164 Glycosyltransferase family 29 (sialyltransferase) family protein (.1) Potri.009G144000 [exp] 53 / 2e-07 AT1G08280 416 / 9e-145 Glycosyltransferase family 29 (sialyltransferase) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031992 [exp] 742 / 0 AT1G08660 743 / 0.0 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2) Lus10035162 [exp] 740 / 0 AT1G08660 742 / 0.0 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2) Lus10043193 [exp] 350 / 8e-117 AT3G48820 697 / 0.0 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2) Lus10032547 [exp] 341 / 4e-113 AT3G48820 692 / 0.0 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2) Lus10043382 [exp] 52 / 4e-07 AT1G08280 186 / 7e-57 Glycosyltransferase family 29 (sialyltransferase) family protein (.1) Lus10019538 [exp] 52 / 5e-07 AT1G08280 454 / 2e-159 Glycosyltransferase family 29 (sialyltransferase) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00777 [poplar] [flax] Glyco_transf_29 Glycosyltransferase family 29 (sialyltransferase)
Representative CDS sequence Show only first row Show all	>Potri.014G145400.1 pacid=42763083 polypeptide=Potri.014G145400.1.p locus=Potri.014G145400 ID=Potri.014G145400.1.v4.1 annot-version=v4.1 ATGAGAACTCTGAAGAACAAGAGAGCATCGATACTGCAATTGGTTTGCGTTGCTGCGTTTTTCTCTCTTGCTGTTTTCATCATTCAATCCTCTTTCTTCA CTGCAGGTGATAATGGAAGCTCAGATCTCAATAAATACTTCAAAAAAGAAATTCAGATTTTGTCCGATTTCCAATCCTCTGTTAAGCAATGCGTGGCGAA CAGAGGGTTTGGTCTAACAGCGAGTATAGTGGATCATTGCAAATTGATTCTTAAGTTTCCACAAGGCACTAACAGCACCTGGTACAATCAGCAATTTAAA AAATTTGAACCATTGGAGTATAATTACGATGTTTGTGACGCCATTCTGTTGTGGGAACAGTATCGGAACATGACGACTGTGCTCACTAGGGAGTATCTAG ATACTCGGCCTGATGGATGGTTGGATTATGCAGCTTTAAGAATTGCTCAATTGGGAGCTAAAAACTGCAGCAATCGAGCTCTTTGCGAGGATCATCTCAA TGTGATTCTTCCTGCAAAGCCTCCCTTTCATCCCCGGCAGTTTCACACTTGTGCAGTTGTTGGAAACTCGGGAGATCTCCTGAAGACAGAGTTTGGAGCA GAGATTGATAGTCATGATGCTGTTATAAGGGACAATGAGGCTCCGGTTAATGAGAAATATGCCAAGCATGTTGGGCTAAAGAGGGATTTTCGCCTTGTGG TTCGGGGTGCTGCTGCTAACATGGTGAAGATCCTGAATGGATCGACTGATGAGGTGCTTATAATCAAAAGTCAAACCCACAGAGACTTCAACGCAATGAT AAAGCTTATTCCAAATCCTGTTTATCTTTTCCAAGGAATTGTGCTACGCAGAGGTGCCAAAGGAACCGGAATGAAAACTATTGAACTAGCACTTTCAATG TGTGACATTGTAGACATATATGGTTTCACTGTTGATCCAGGCTACACTGAATGGACAAGATACTTCTCTACGCCTAGGAAAGGGCATAATCCACTTCAAG GACGAGCATATTACCAGCTCCTAGAGTGCCTTGGTGTCATTAGGATCCACTCTCCCATGAGAGCCCAGAGGACACAAGACTGGTCAGATGTGCCAAGTCG AGAAATGATAAGCAGAGCTCATGCTGCGGCTTTGCGCTTAAAGAGGGGTCATGTTAATCAGGCTGCTGATTCGGGACAGTTTGGAAGTTGCAAGGTGTGG GGCAATGTGGACCCTGACAACAGTGGGCCTATCTCAGGATCTTCAGACATGAGTGATGTGAGGAGAAACTCAAATTACAGTAAATGGGAAGTTATGCCTT TTGGAAGTCTAAGAAAGGAAGCACAGGATCACTATGCTCAGATGGGAGGTGTGTCTCTGTACAAAATGGATGGCAACAGATTGGATGATTTAGTATGCGT CAGGCATTCCTTGAAATCCGAGGCATGA
AA sequence Show only first row Show all	>Potri.014G145400.1 pacid=42763083 polypeptide=Potri.014G145400.1.p locus=Potri.014G145400 ID=Potri.014G145400.1.v4.1 annot-version=v4.1 MRTLKNKRASILQLVCVAAFFSLAVFIIQSSFFTAGDNGSSDLNKYFKKEIQILSDFQSSVKQCVANRGFGLTASIVDHCKLILKFPQGTNSTWYNQQFK KFEPLEYNYDVCDAILLWEQYRNMTTVLTREYLDTRPDGWLDYAALRIAQLGAKNCSNRALCEDHLNVILPAKPPFHPRQFHTCAVVGNSGDLLKTEFGA EIDSHDAVIRDNEAPVNEKYAKHVGLKRDFRLVVRGAAANMVKILNGSTDEVLIIKSQTHRDFNAMIKLIPNPVYLFQGIVLRRGAKGTGMKTIELALSM CDIVDIYGFTVDPGYTEWTRYFSTPRKGHNPLQGRAYYQLLECLGVIRIHSPMRAQRTQDWSDVPSREMISRAHAAALRLKRGHVNQAADSGQFGSCKVW GNVDPDNSGPISGSSDMSDVRRNSNYSKWEVMPFGSLRKEAQDHYAQMGGVSLYKMDGNRLDDLVCVRHSLKSEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Potri.014G145400 [exp]	0	1
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Potri.006G158676 [exp]	1.41	0.7284
AT4G16460			unknown protein		Potri.006G016100 [exp]	5.09	0.6997
AT5G42320			Zn-dependent exopeptidases sup...		Potri.002G010800 [exp]	11.74	0.6505
AT2G05230			DNAJ heat shock N-terminal dom...		Potri.002G221000 [exp]	11.83	0.6655
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Potri.016G075500 [exp]	12.24	0.6936
AT3G20720			unknown protein		Potri.001G417200 [exp]	14.17	0.6987
AT1G73820			Ssu72-like family protein (.1)		Potri.015G036600 [exp]	26.49	0.6401
AT3G07530			unknown protein		Potri.004G236000 [exp]	29.79	0.6494
AT1G67190			F-box/RNI-like superfamily pro...		Potri.009G164200 [exp]	30.91	0.6950
AT3G09320			DHHC-type zinc finger family p...		Potri.016G100200 [exp]	32.44	0.6667

Compare expression of checked genes

Potri.014G145400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.