Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26780 452 / 3e-158 MEF14 mitochondrial editing factor 14, Phosphoglycerate mutase family protein (.1) AT1G12850 452 / 5e-158 Phosphoglycerate mutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G236600 [exp] 619 / 0 AT1G12850 463 / 1e-162 Phosphoglycerate mutase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035155 [exp] 482 / 2e-169 AT3G26780 491 / 2e-173 mitochondrial editing factor 14, Phosphoglycerate mutase family protein (.1) Lus10031987 [exp] 478 / 7e-168 AT3G26780 498 / 3e-176 mitochondrial editing factor 14, Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [poplar] [flax] His_phosphatase PF00300 [poplar] [flax] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Potri.014G145900.1 pacid=42763802 polypeptide=Potri.014G145900.1.p locus=Potri.014G145900 ID=Potri.014G145900.1.v4.1 annot-version=v4.1 ATGGGCTCCACCCAGTCCGCCCAAGCAGCTCAAGACGACGGAGAAGAAAGCGAAGAAGAAGAAGAAGAAGATAAAGACGACGACGAAGAAGAAGAAGAAG AAGAGCTGGAACAGCCTAACGCGAGAGAAATTACTGACAGCAACAATAATTTAGTCAAGAAGGTTCTACAACAGGAGCCAGAGATGCTGCCCTGTTACGC ATCAGCATCGCCTCTCTCTCCTCAGCTCTCATCTCTAGGTACCCCTAGGCTCGGCCCTTCTATCAAGGTGTGGGACCCTTACAATGTCCTCGCACCGCCC CCTCCCCCGCCCCCGTCATTGCCTATTTTCTCCTCCTCCTCCGATGAAGTTGGCGTTTTGGAGGTGTTTTTGATCAGTCACGGAGAGTGCGAGCTCAATT TGAGGCCTGATTTAGTCGGTGGGAGGTGCCACGTGTCTGCTCTGACTCCCAATGGGCAGCGACAAGCTAGGGCTCTTGCTGTCTTCTTCAACTCTCAAGG GGTCAGCTTCCATTCCGTTTACTCGTCGCCCCTGAATCGTGCTAGATCAATGGCTGTCTCCGTTTGTCAGGAAATGAATTTTGCCAAGGAGCAAATACAA TCATCGGATGCACTCATGGATTTGAGCATGGGGCTTTGGGAAGGTTGCTCCCTTTCAGATATATATACACCTGAAGTTCAGAGCCTGCTTGAAAATCTTC AGCCCGATTTTTGTGCACCATCTGGAGAATCAATTAGGCAAGTGGAATTTAGGATGGTTCAGTTCCTAAATAGGACAGTCCTGGGAATGCCTGAAAAGTT GGGATCAGATTTCTTGTTGCACCATCAAAATGAGAGCCATGGGTTTTCTCATGACAGAGATGGGCCTTCTCTACCACCACCTTCAAATTGGGATATGCAG CATATGCTTCATAGGCACCGACAGGGCCTCGCAAGGAAAAAGTCTGGTAAGAGCAGGCTACAGTTTGTGACTACTACTGGCAATCACGAGGGTGAGGATG AGATCTCACTTAGGGAAGCCAGCCACCAACACACGATCCATGATTTGAATATCAGGAACTCATCCTCCCCAGTATCTTCATGTGTGGGTGTTTTCACGCA TTCAATTCCTATTAAGTGTCTACTCACAGGCATCCTAGGGTGCAGCCCAGTAATGATGCGTAAGATCTGCATAGAAGATTCTTCGGTGACAGTGTTACAG CATTCATGTAAAACAGGTTGGCAGATTAAACGCTTGAATGATACTGCACATCTGAGACTTCTCTAA
AA sequence Show only first row Show all	>Potri.014G145900.1 pacid=42763802 polypeptide=Potri.014G145900.1.p locus=Potri.014G145900 ID=Potri.014G145900.1.v4.1 annot-version=v4.1 MGSTQSAQAAQDDGEESEEEEEEDKDDDEEEEEEELEQPNAREITDSNNNLVKKVLQQEPEMLPCYASASPLSPQLSSLGTPRLGPSIKVWDPYNVLAPP PPPPPSLPIFSSSSDEVGVLEVFLISHGECELNLRPDLVGGRCHVSALTPNGQRQARALAVFFNSQGVSFHSVYSSPLNRARSMAVSVCQEMNFAKEQIQ SSDALMDLSMGLWEGCSLSDIYTPEVQSLLENLQPDFCAPSGESIRQVEFRMVQFLNRTVLGMPEKLGSDFLLHHQNESHGFSHDRDGPSLPPPSNWDMQ HMLHRHRQGLARKKSGKSRLQFVTTTGNHEGEDEISLREASHQHTIHDLNIRNSSSPVSSCVGVFTHSIPIKCLLTGILGCSPVMMRKICIEDSSVTVLQ HSCKTGWQIKRLNDTAHLRLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26780		MEF14	mitochondrial editing factor 1...		Potri.014G145900 [exp]	0	1
AT4G26850		VTC2	mannose-1-phosphate guanylyltr...		Potri.001G355600 [exp]	8.94	0.7626	VTC2.2
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Potri.001G142600 [exp]	11.61	0.8049	BOU.1
AT3G02830	C3HZnF	ZFN1	zinc finger protein 1 (.1)		Potri.019G053200 [exp]	20.71	0.7649	ZFN3.2
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Potri.004G168000 [exp]	39.10	0.6818
AT5G63980		SUPO1, RON1, AL...	suppressors of PIN1 overexpres...		Potri.005G063900 [exp]	129.60	0.7031	Pt-SAL2.1
AT2G45290			Transketolase (.1)		Potri.014G068200 [exp]	232.10	0.6625

Compare expression of checked genes

Potri.014G145900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.