Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14200 96 / 6e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G235900 [exp] 897 / 0 AT4G14200 97 / 4e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021962 [exp] 159 / 3e-39 AT4G14200 79 / 1e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041255 [exp] 147 / 4e-38 AT4G14200 76 / 1e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G146200.4 pacid=42763504 polypeptide=Potri.014G146200.4.p locus=Potri.014G146200 ID=Potri.014G146200.4.v4.1 annot-version=v4.1 ATGGATAGCCAAGATCCCAGAAAGAACCCTACACACACACCAGGGCATGAGAGCCATGGAGTTTATGTCTGTCACAAATGTGGGTGGCCCTTTCCAAACC CACATCCAAGTGCAAGACACAGGCGTGCACACAAGAAGATCTGTGGAACTCTTGAAGGATACAAGTTTGTTGACTCTGAGGAGACTCCACTCTCGGCCCT TTCTGACGATGACCATGGTTCTGATGAAGATCCTAAAACCCCTAGTCCAAAAGGTTTGGAGAGAGGTATTAACGAGAAGGGTTGTGGTGGGGTAGGGAGC AGATCGAATAGATCAGAAGATGATGTTTTTACGGATGCTATTGCCGAATTTCCTGAAAGCGGATCTAGTCCGGTGACTGGAGAGCATACAAGGGATGTTA AAGAACCAGAAATTAACCTGGAAATCAATAAAGCCACTGCTCAATCATCCGAGGATGGTTCAATTACTGTTATCAGCCCACCTCCAAGCAATTCAGCTGA CCACATCCAAATGCAAAGTACTGAAGTTCCAGTAATTAATCTGTCTGGAAGTGCTCAAGAGTCCCTGGATCATGGCTCGAATGCTACCATTGCCTCCATG ACCAGATCTTTAACAGATTGTAGAGGTGAAGAATCTGACTTTGAGCATAGCCATGATAACGGAAGTTCTGCATGGGATTCAATCCCCATCAAACTTGAAA CACAAACAGATGCATCACAAGAGAATAAGAAGAGTGGCACTGTCGAGGATTTGCCAGAGACTGATGCAAAAGGAAATGAAGAAACTAAATTAGATGGACA GCTACTGGATGTAGTGGTTTCAACGGATGACAATGCAGAGGATGCATCTGAGTCACAGAAGATGGAGGATGTAACTTCACAGCCTGTGCCTGCTGCAGAA GTCCTTCAATTGAAGGAAGGAGGCTATACTGATGATTTAGCCTCTGGAATGTCTTTAAATGATCTCTCCCCTGAAGTTAATTTGGCTGAACCTGCGCATT CTTCTATTTCCACTGCTCAGATCGAGGGGGATACTCAAGAAATCGACTCTGCTGTTTATGTAAATTCAGCTGTGAGTTATGATAATAAGGGAGAAGGAAA TGGAAATATGCATGTGCTGATAGTTCCCAATGACTTAACTTTAGTTGCTGATGCTGAGAACATGGTTAAAGGTTTTAAAGACCTTGAAGGAGGGAAATTG CCCCAACTTATGAACATGGATTCGTTTGAAGTATCTAACAATGTTAAGGATTCTGACCTTAAGAACAATCCTCAGGGTTTTAACTCAAGGCCATTGACTG AGGACACCGAAGTCTCTGCATCCAATATGCATGTTTTGAATGATAACCTTGAACCAAAAGATGGGACCAGCCAGCATATTGTTGAATTGCCTGATGAAGC AGAAGCTGATATGCCCCAGAGATCAGAAGTTGGTGTAACAGATGTTGTGACGGGTGACTTGGAGAAGAGCATTTCTGTTCACTCTCCTGAAGAAGATGTA CCTCGTGATCATTGTGAAACTTCATCTCTGACGAGTTCTATAGAGCATGCTACAAAAGCCACATCTGATACTAACACTGTGGTTGTGCCAATGGATGCTG AGGTTAGGCAGACAAACTTAATTGGCATGGATGATACTGGTAATGATGAAAAAGATAAAATTGAAAGTTCTGAAGTAGGTGAAAATGACAAAAACAAAAG AAATACAAAGGAGAGTTTTGCAGAAAACAGGATACCAACTTCTAAACATGCTAGTATTTCCTCTGAGCAAGCTGATCAAAGGAACAGCGTACTTGGAGAT GTCAAAGCTGCTGGTCTTGAAGAGGGTAAAATAGAAAGATGCAATGCGTCTGAAATTGTAACTGAAGGTGATTCTGTATCTGGATTGGGGGAGGAAAATC TCTTGAGGGAGCCAAAATCAACACCTGAATCTGCTGTCAATGTCGAATCCTGTTTTACCTCAGAGAATGATATTAATGTGTGTGAGGGAAGGTTGCCACA ACTTGCTAGTATTCCCTCTGAACAAGCTGATCAAAGGAACAGCGTACTTGGAGATGTCAAAGCTGCTGGTCTTGAAGAGGGTAAAATAGAAAGATGCAAT GCGTCTGAAATTGTAACTGAAGGTGATTCTGTATCTGGATTGGGGGAGGAAAATCTCTTGAGGGAGCCAAAATCAACACCTGAATCTGCTGTCAATGTCG AATCCTGTTTTACCTCAGAGAATGATATTAATGTGTGTGAGGGAAGGTTGCCACAACTTGCTAGTATTCCCTCTGAACAAGCTGATCAAAGGAACAGCGT ACTTGGAGATGTCAAAGCTGCTGGTCTTGAAGAGGGTAAAATAGAAAGATGCAATGCGTCTGAAATTGTAACTGAAGGTGATTCTGTATCTGGATTGGGG GAGGAAAATCCCTCGAGGGGGCCAAAAACAACACCTGAATCTGCTGTCAATGTCGAATCCTGTTTTATCTCAGAGAATGATATTAATGTGTGTGAGGGCA AGTTGCCACAACATGAACACACTGATATAGGTGGAGTTTTGGATCCTCAGGAAAGCAGAAAGGAACCTGAAAGCAATGGTATGGCCAATCAACTAGTTGA GCGTGCTGGTGAAGTTAGTGCAGCTGCTGAATCATATAGTGGTGGAGATGCTGAGGTATTATGGAAGTCTTCTGAAGACAAGATGGTGAGAGAGCCTCTA GTTTCTCGTTCAGAACCTTCATCTTCCCTTCAAAATTCTTCCCCTGTTGCAGATAATCAGGCCAAAGATTTTCTTGGAGTTGCATCTGGGAACACACCTG AGTCTTTGCCTGATGAAGGTGATAATAACTTAGTTACACAACAGGTTGTTGCATCTGCTACTGACTTTTCAGTTGATTCAATTAGCCAAACTGATAGTTT GGAAGGTCACTGGGGTTCCGTTTCAGTGCTTTCTACCCAATCGGATATACCAGCTATTCTTGATGCTGAGCCTTTGCCATCAAATGGTTCCCAAGCATTA TCAGAAGCAGAGAAAGCCACCTTGAAGAAGCCGATAGCTGCTTCTGAGACAGAACATGCTGATAAATCAGATATTTTTGATCCCCCATCTTTCATGACAT TGGTTGAACCTAGAGATGTGGTTAACCAGAAAGCTGCTGCATCTGAAATCCAGACAACAGGGAACCCACAACAGCCAAAAGCTGCTTCTGTACAAGCTGG TTGGTTTCCTTCCATTACCAATGTTTTGAGTGAGTCGCAGGGGAGAAAAAAGAACGAAGAGATTATTGCCAAGGTCACAAACTGGAGCACCGGGGAACAA CACCCTTCTCTGAGGAGCCCACAACATACTCCTTTAAAGAGCCTTTTAGGCGAGGCAAGTATGGAAACCAAATCCAAGGCACTAAATGCCAAGGAAATCC CAGTTGAAAAGGATGGTTTCGCAGCTAAAGATAACGGTGCTTTGCCTAAAACAGTGAGCTCCATTCTGGCTCCTCAAGAACCTGTAGGTGAGCCTGCCAT GGTGGAAGAGAAAGCATGGAGTTCTCCAGCAAGGTATCCTGCAGATATTAAGAGAGAGAAGAGGAAAGTCAGGGGAAGACCATACTGGGCACAATTTGTT TGCTGCTCATCTGTAAATTAG
AA sequence Show only first row Show all	>Potri.014G146200.4 pacid=42763504 polypeptide=Potri.014G146200.4.p locus=Potri.014G146200 ID=Potri.014G146200.4.v4.1 annot-version=v4.1 MDSQDPRKNPTHTPGHESHGVYVCHKCGWPFPNPHPSARHRRAHKKICGTLEGYKFVDSEETPLSALSDDDHGSDEDPKTPSPKGLERGINEKGCGGVGS RSNRSEDDVFTDAIAEFPESGSSPVTGEHTRDVKEPEINLEINKATAQSSEDGSITVISPPPSNSADHIQMQSTEVPVINLSGSAQESLDHGSNATIASM TRSLTDCRGEESDFEHSHDNGSSAWDSIPIKLETQTDASQENKKSGTVEDLPETDAKGNEETKLDGQLLDVVVSTDDNAEDASESQKMEDVTSQPVPAAE VLQLKEGGYTDDLASGMSLNDLSPEVNLAEPAHSSISTAQIEGDTQEIDSAVYVNSAVSYDNKGEGNGNMHVLIVPNDLTLVADAENMVKGFKDLEGGKL PQLMNMDSFEVSNNVKDSDLKNNPQGFNSRPLTEDTEVSASNMHVLNDNLEPKDGTSQHIVELPDEAEADMPQRSEVGVTDVVTGDLEKSISVHSPEEDV PRDHCETSSLTSSIEHATKATSDTNTVVVPMDAEVRQTNLIGMDDTGNDEKDKIESSEVGENDKNKRNTKESFAENRIPTSKHASISSEQADQRNSVLGD VKAAGLEEGKIERCNASEIVTEGDSVSGLGEENLLREPKSTPESAVNVESCFTSENDINVCEGRLPQLASIPSEQADQRNSVLGDVKAAGLEEGKIERCN ASEIVTEGDSVSGLGEENLLREPKSTPESAVNVESCFTSENDINVCEGRLPQLASIPSEQADQRNSVLGDVKAAGLEEGKIERCNASEIVTEGDSVSGLG EENPSRGPKTTPESAVNVESCFISENDINVCEGKLPQHEHTDIGGVLDPQESRKEPESNGMANQLVERAGEVSAAAESYSGGDAEVLWKSSEDKMVREPL VSRSEPSSSLQNSSPVADNQAKDFLGVASGNTPESLPDEGDNNLVTQQVVASATDFSVDSISQTDSLEGHWGSVSVLSTQSDIPAILDAEPLPSNGSQAL SEAEKATLKKPIAASETEHADKSDIFDPPSFMTLVEPRDVVNQKAAASEIQTTGNPQQPKAASVQAGWFPSITNVLSESQGRKKNEEIIAKVTNWSTGEQ HPSLRSPQHTPLKSLLGEASMETKSKALNAKEIPVEKDGFAAKDNGALPKTVSSILAPQEPVGEPAMVEEKAWSSPARYPADIKREKRKVRGRPYWAQFV CCSSVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14200			Pentatricopeptide repeat (PPR)...		Potri.014G146200 [exp]	0	1
AT3G04810		ATNEK2	NIMA-related kinase 2 (.1.2)		Potri.005G051600 [exp]	1.73	0.8547
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.007G097600 [exp]	2.00	0.8291
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.013G086600 [exp]	3.87	0.8400
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.013G051200 [exp]	4.47	0.8412
					Potri.019G120050 [exp]	7.74	0.7933
AT3G09730			unknown protein		Potri.006G130600 [exp]	14.07	0.7171
AT5G10020			Leucine-rich receptor-like pro...		Potri.005G083000 [exp]	15.29	0.7738
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Potri.003G162000 [exp]	15.65	0.7911
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Potri.010G241800 [exp]	16.79	0.7279
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Potri.002G113800 [exp]	17.20	0.7878	RXW8.1

Compare expression of checked genes

Potri.014G146200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.