Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SDG938
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05830 1273 / 0 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT2G31650 1254 / 0 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT5G53430 249 / 4e-68 SET29, ATX5, SDG29 SET domain group 29 (.1) AT4G27910 245 / 5e-67 SDG16, ATX4 SET domain protein 16 (.1) AT3G61740 236 / 2e-64 SDG14, ATX3 SET domain protein 14 (.1.2) AT5G42400 133 / 3e-31 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT3G14740 108 / 4e-25 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT1G77800 103 / 4e-22 PHD finger family protein (.1.2) AT3G59960 92 / 1e-19 SDG24, ASHH4 SET DOMAIN PROTEIN 24, histone-lysine N-methyltransferase ASHH4 (.1) AT1G77300 93 / 9e-19 ASHH2, CCR1, SDG8, EFS, LAZ2 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G232800 [exp] 1942 / 0 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.002G170600 [exp] 234 / 3e-63 AT3G61740 1140 / 0.0 SET domain protein 14 (.1.2) Potri.014G098400 [exp] 228 / 2e-61 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.005G260100 [exp] 154 / 8e-38 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.018G023000 [exp] 154 / 2e-37 AT1G05830 160 / 2e-39 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.002G001000 [exp] 153 / 2e-37 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.015G014300 [exp] 137 / 1e-32 AT5G53430 1322 / 0.0 SET domain group 29 (.1) Potri.012G013900 [exp] 134 / 1e-31 AT5G53430 1423 / 0.0 SET domain group 29 (.1) Potri.005G171800 [exp] 116 / 6e-26 AT1G77800 522 / 2e-160 PHD finger family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026725 [exp] 1492 / 0 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025508 [exp] 1473 / 0 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10012626 [exp] 219 / 2e-58 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10010121 [exp] 208 / 8e-55 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2) Lus10005007 [exp] 165 / 3e-41 AT4G27910 611 / 0.0 SET domain protein 16 (.1) Lus10025172 [exp] 152 / 7e-37 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10016051 [exp] 150 / 2e-36 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10004012 [exp] 147 / 2e-36 AT3G61740 424 / 2e-136 SET domain protein 14 (.1.2) Lus10030262 [exp] 128 / 1e-29 AT3G61740 742 / 0.0 SET domain protein 14 (.1.2) Lus10024777 [exp] 113 / 1e-25 AT1G77800 385 / 7e-120 PHD finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF00855 [poplar] [flax] PWWP PWWP domain CL0049 [poplar] [flax] PF00856 [poplar] [flax] SET SET domain CL0049 [poplar] [flax] PF05964 [poplar] [flax] FYRN F/Y-rich N-terminus CL0049 [poplar] [flax] PF05965 [poplar] [flax] FYRC F/Y rich C-terminus CL0390 [poplar] [flax] zf-FYVE-PHD PF13771 [poplar] [flax] zf-HC5HC2H PHD-like zinc-binding domain CL0390 [poplar] [flax] zf-FYVE-PHD PF13831 [poplar] [flax] PHD_2 PHD-finger
Representative CDS sequence Show only first row Show all	>Potri.014G146300.3 pacid=42763611 polypeptide=Potri.014G146300.3.p locus=Potri.014G146300 ID=Potri.014G146300.3.v4.1 annot-version=v4.1 ATGGCACTTCTCCACAAACCCCACACAGTAGATAAAATCCACAAATCTCCTCTCGATTTCGAAGAAGGTGAAGCCGGGGGCACCCCGATACGCTACGTGT CGTTGGACCGTGTCTACTCTGCCGCATCTCTCTGTGGATCAGCCAACGTTATGTCAAAGAAAGTTAAAGCCCGGAAGCTCTTACCCCACCACCAACACCA CCTTCACCATCCACGGGCCGACCACCCCCCTTCTTTACTCCACGTTTACTCTCGCCGTCCAAAACGGGCCCCCCGACCTTCCTTTTTTGATTCGTTGGTT TCACGCGCCGCTGAGCCTAAGGAGGCGGTGAAGAGCGACTTTTGTGAATTTGAGGAGGAGTCGATGATCGAGTTGAACAAGGAGAAGAAGAGGAGAAGGA CGGGGAGTAAGGAGTTGCTGAAATTGGGTGTCGATTCTAATATTTTGCTAGGGTTTGATAGGCCTCGATTGAGGGATTGCCGTAATAATACTAACAACAG TAATAGTAAGATTGGGGATTTTAAGAGAAAGAAACGTGATTCTATGGTTACGAGTTCTGATAAATTTTCGGCCCTTCCAGCTACTAGTAAAAAATGGGTC AGGTTGAGTTTTGATGGTGTTGATCCGAAATCATTCATTGGGTTACCATGCAAGGTTTACTGGCCAATGGATGCTGAATGGTATTCTGGACGTGTTGTTG GGCACATCGCAGATACCAATCGATACAATATTGAATATGAAGATGGAGATAAAGAGGACTTAATAATTTCGAACGAGAAAGTAAAATTTTTTATTTCTCA TGAGGAGATGGAGCGGTTGAACCTGACTGTCTCTGTAAAAAGTACAGATGGTGATAGATATGATTACAATGAGATGGTTGTGTTAGCTGCCAGTTTGGAT GACTGCCAAGATCTCGACCCTGGGGATATCATATGGGCCAAAGTCACTGGTCATGCTATGTGGCCAGCAATTGTTGTAGATGAAGCACTTATTGGCAATC ATAAAGGCTTAAGCAAAAATATTGGAGGAAGATCAGTATCTGTGCAATTTTTTGGTACCCATGATTTTGCAAGAATTAAACCAAAGCAGGCAATCTCGTT TCTCAAAGGACTTCTTTCTTCTTTCCACCTAAAGTGCAAGCAACCTCGTTTCACTCGAAGCTTGGAAGAAGCGAAAATGTATCTCAGTGAACAAAAGCTT CCGAGAAGAATGCTGCAGCTGCAAAATGGCATGAAAGCTGATAGCTGTGAGAGTGCGAGTAGTGAGGATGAAGGGAGTACAGATTCAGGAGAAGATTGCA TACAAGATGGAGGGATTCGAAGGATATTGGCTAGGCTGGGTACTTCTCCTTATGTAATTGGGGATTTGCAAATAATAAGCCTTGGAAAGATTGTCAAGGA CTCAGAACATTTCCAAGATGACAGATTCATCTGGCCTGAAGGGTATACTGCCCTGAGGAAATTTACTTCGATAAAAGATCCAAATGTTCATATGATGTAC AAGATGGAAGTGTTGAGAGATGCCGAGTCAAAGATTCGGCCTCTATTTAGAGTGACATTGGATAATGGAGAGGAGATAAAAGATGATCGAGGAAACACAA ACTTTGTAGGGCATATTTTGCGGGAATGGGGTAGAATAGAACTTATTAAAGGATCCACTCCAGCTGCTTGCTGGGATAAAATATACAGAAAAATAAGGAA GATGCAAGATAGTACTTCTAATGGTTTTAGCACTGAAGGTGGAGTAGGAAGAATACTCAAATCAGGTTCTGAAATGTTTGGGTTCTCCAATCCTGAAGTT ATAAAATTAATTAAGGGATTATCAAAATCTAGACATTCTTCCAAACTGTCTATGTGCAAGTTATCATCTGAAAGATATCAAGGCATACCTGTTGGTTACA GACCTGTTCGTGTTGATTGGAAAGACCTTGATAAGTGCAATGTCTGCCATATGGATGAGGAATACGAAAACAATTTGTTCCTGCAGTGTGACAAATGCAG AATGATGGTCCATGCCAGATGCTATGGGGAATTAGAACCTGTTGATGGTGTGCTGTGGTTATGCAATTTATGCCGACCAGGGGCTCCTGACTCCACACCA CCATGCTGCCTTTGTCCTGTTATAGGTGGTGCTATGAAGCCTACAACGGATGGACGCTGGGCTCATTTGGCTTGTGCCATATGGATACCTGAAACTTGCC TATCTGATGTCAAGAGAATGGAGCCCATTGATGGGCTAAATAGAATCAATAAGGATCGTTGGAAGCTTTTATGTAGTATATGTGGTGTAGCTTATGGAGC TTGTATCCAGTGTTCAAATAACGCTTGCCGGGTAGCATATCATCCTCTTTGTGCACGCGCTGCTGGCCTTTGTGTTGAGCTTGAGGATGAGGACAGACTC TATCTCCTTTCTTTAGATGAAGATGACGCAGATCAGTGCATTCGCTTACTTTCCTTCTGCAAGAAGCATAGGCAGCCATCTAATGAGCGTGTGGTCACAG ATGAACGGGTTGGTCAAATTCCTCGTCGGTGTTCTGACTACATCCCACCATGTAATCTATCGGGATGTGCTCGTACGGAGCCTTACAATTATTTTGGGAG AAGGGGACGGAAAGAACCTGAAGTCCTTGCTGCTGCATCCTTGAAGCGATTGTTTGTAGAGAATCAGCCGTACTTGGTTGGTGGTTACTCTCAACATGAG TCTTCAGGATGTACACTTGCTTCTAATGGACTCATTAACTCTGGCTTCTCTTCTAGTCTTCAAAGGCTAAGAGCCTCTCAGCTTGATGCTCCGAGTAACA TTCTCTCTATGGCTGAAAAGTATCAACACATGCGGCATACCTTCCGAAAGAGATTAGCATTTGGGAAATCTGGAATCCATGGATTTGGCATCTTTGCAAA GCATCCACATAGAGCCGGAGACATGGTCATTGAATATACTGGTGAACTAGTCAGACCTCCAATAGCTGATAGGAGAGAGCACTTTATCTACAATTCATTA GTGGGTGCTGGGACTTACATGTTTAGAATTGATGATAAACGAGTCATTGACGCCACAAGGGCTGGAAGTATTGCTCATCTGATTAATCACTCATGTGAGC CCAATTGCTATTCAAGAGTTATAAGCGTTAACGGTGATGAGCATATAATTATATTTGCAAAGAGAGATATTAAAAGATGGGAGGAACTCACATATGATTA TAGATTTTTCTCAATTGAAGAAAAACTAGCATGCTATTGTGGCTTCTCTCGATGCCGTGGTGTGGTTAATGACACGGAAGCTGAGGAGCAAGTGGCTAAG CTCTATGCTCCTCGCAGCGAATTGACAGACTGGAAAGGAGAATAA
AA sequence Show only first row Show all	>Potri.014G146300.3 pacid=42763611 polypeptide=Potri.014G146300.3.p locus=Potri.014G146300 ID=Potri.014G146300.3.v4.1 annot-version=v4.1 MALLHKPHTVDKIHKSPLDFEEGEAGGTPIRYVSLDRVYSAASLCGSANVMSKKVKARKLLPHHQHHLHHPRADHPPSLLHVYSRRPKRAPRPSFFDSLV SRAAEPKEAVKSDFCEFEEESMIELNKEKKRRRTGSKELLKLGVDSNILLGFDRPRLRDCRNNTNNSNSKIGDFKRKKRDSMVTSSDKFSALPATSKKWV RLSFDGVDPKSFIGLPCKVYWPMDAEWYSGRVVGHIADTNRYNIEYEDGDKEDLIISNEKVKFFISHEEMERLNLTVSVKSTDGDRYDYNEMVVLAASLD DCQDLDPGDIIWAKVTGHAMWPAIVVDEALIGNHKGLSKNIGGRSVSVQFFGTHDFARIKPKQAISFLKGLLSSFHLKCKQPRFTRSLEEAKMYLSEQKL PRRMLQLQNGMKADSCESASSEDEGSTDSGEDCIQDGGIRRILARLGTSPYVIGDLQIISLGKIVKDSEHFQDDRFIWPEGYTALRKFTSIKDPNVHMMY KMEVLRDAESKIRPLFRVTLDNGEEIKDDRGNTNFVGHILREWGRIELIKGSTPAACWDKIYRKIRKMQDSTSNGFSTEGGVGRILKSGSEMFGFSNPEV IKLIKGLSKSRHSSKLSMCKLSSERYQGIPVGYRPVRVDWKDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVDGVLWLCNLCRPGAPDSTP PCCLCPVIGGAMKPTTDGRWAHLACAIWIPETCLSDVKRMEPIDGLNRINKDRWKLLCSICGVAYGACIQCSNNACRVAYHPLCARAAGLCVELEDEDRL YLLSLDEDDADQCIRLLSFCKKHRQPSNERVVTDERVGQIPRRCSDYIPPCNLSGCARTEPYNYFGRRGRKEPEVLAAASLKRLFVENQPYLVGGYSQHE SSGCTLASNGLINSGFSSSLQRLRASQLDAPSNILSMAEKYQHMRHTFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPPIADRREHFIYNSL VGAGTYMFRIDDKRVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKRWEELTYDYRFFSIEEKLACYCGFSRCRGVVNDTEAEEQVAK LYAPRSELTDWKGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Potri.014G146300 [exp]	0	1	SDG938
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Potri.006G041100 [exp]	3.16	0.6964	ARR9.1
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Potri.005G129500 [exp]	4.00	0.7031
AT4G32640			Sec23/Sec24 protein transport ...		Potri.005G049100 [exp]	5.19	0.7027	CEF.1
					Potri.017G044300 [exp]	8.71	0.7183
AT1G23540		IGI1, AtPERK12	proline-rich extensin-like rec...		Potri.008G189700 [exp]	8.83	0.6842
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Potri.005G077600 [exp]	15.87	0.6744
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Potri.014G085400 [exp]	17.94	0.6260
AT5G07890			myosin heavy chain-related (.1...		Potri.015G048900 [exp]	19.07	0.6686
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Potri.014G074700 [exp]	20.68	0.6972
AT3G17900			unknown protein		Potri.008G194566 [exp]	22.00	0.6690

Compare expression of checked genes

Potri.014G146300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.