Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05840 758 / 0 Eukaryotic aspartyl protease family protein (.1) AT3G02740 505 / 6e-177 Eukaryotic aspartyl protease family protein (.1) AT5G36260 445 / 2e-153 Eukaryotic aspartyl protease family protein (.1) AT1G65240 440 / 3e-151 Eukaryotic aspartyl protease family protein (.1) AT5G22850 317 / 3e-103 Eukaryotic aspartyl protease family protein (.1) AT2G36670 311 / 2e-100 Eukaryotic aspartyl protease family protein (.1.2) AT1G08210 303 / 9e-98 Eukaryotic aspartyl protease family protein (.1) AT5G43100 152 / 6e-40 Eukaryotic aspartyl protease family protein (.1) AT3G50050 142 / 2e-36 Eukaryotic aspartyl protease family protein (.1) AT3G42550 135 / 5e-35 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G054900 [exp] 580 / 0 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 312 / 4e-101 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 308 / 2e-99 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 292 / 2e-93 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.016G096700 [exp] 274 / 3e-86 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.014G020200 [exp] 151 / 1e-39 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G144600 [exp] 138 / 6e-35 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 134 / 2e-34 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.005G108700 [exp] 134 / 6e-34 AT2G17760 515 / 1e-179 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021485 [exp] 787 / 0 AT1G05840 723 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10036430 [exp] 562 / 0 AT3G02740 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041103 [exp] 561 / 0 AT3G02740 548 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027001 [exp] 541 / 0 AT5G36260 546 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10020201 [exp] 539 / 0 AT5G36260 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021397 [exp] 306 / 1e-98 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10005356 [exp] 302 / 5e-97 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10014391 [exp] 293 / 2e-93 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10027732 [exp] 286 / 4e-91 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035556 [exp] 285 / 4e-85 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Potri.014G146400.1 pacid=42762409 polypeptide=Potri.014G146400.1.p locus=Potri.014G146400 ID=Potri.014G146400.1.v4.1 annot-version=v4.1 ATGCTGATGATGATGGCGGAGGCTCAGTCCCGTGTTCTTCTTCTTACGATGATGATTTCTTTCACAATTGTTTCTGCAAACAACGGAGTTTTTAGCGTCA AATACAAATACGCTGGCCTTCAACGTTCTCTCAGTGACCTAAAAGCACACGACGATCAACGACAGCTCCGTATTCTCGCCGGAGTCGATCTTCCCCTCGG CGGCATCGGTCGTCCCGATATCCTCGGGCTATATTATGCTAAGATAGGGATTGGAACTCCGACGAAGGACTACTATGTACAAGTGGATACAGGAAGTGAT ATTATGTGGGTTAATTGTATTCAATGCAGAGAATGCCCAAAAACTAGCTCTCTTGGTATTGATCTTACTTTATATAATATAAACGAGTCAGACACTGGGA AGCTGGTTCCTTGTGATCAAGAGTTTTGCTATGAGATAAACGGGGGTCAATTACCTGGCTGCACCGCTAATATGTCTTGTCCGTATCTTGAGATTTATGG AGATGGGAGTTCCACTGCTGGTTATTTTGTCAAGGATGTTGTGCAGTATGCTAGAGTTTCTGGTGATCTCAAAACTACTGCAGCAAATGGAAGTGTTATA TTTGGGTGTGGTGCTAGACAATCAGGAGATCTAGGGTCATCTAATGAAGAAGCACTTGATGGGATACTTGGTTTTGGAAAATCAAATTCGTCGATGATTT CACAGCTGGCAGTAACTGGAAAAGTGAAGAAGATATTTGCGCACTGCTTAGATGGTACAAATGGAGGTGGAATATTTGTTATTGGGCATGTTGTGCAACC AAAAGTTAACATGACTCCTTTGATACCAAATCAGCCCCATTACAATGTCAATATGACGGCAGTTCAAGTTGGTCATGAATTCCTAAGTCTTCCAACAGAT GTATTTGAGGCAGGGGACAGAAAGGGTGCTATAATAGACAGTGGTACAACCTTAGCTTATCTTCCAGAAATGGTTTATAAGCCATTAGTAAGTAAGATAA TCTCTCAGCAACCTGATCTGAAAGTTCATACTGTTCGTGATGAATATACATGTTTCCAGTACTCTGACAGCTTGGATGATGGATTTCCGAATGTCACTTT CCATTTTGAAAACTCAGTTATCTTGAAGGTTTATCCACACGAGTATCTTTTTCCCTTTGAAGGTTTGTGGTGTATTGGATGGCAGAACAGTGGAGTGCAA TCGAGGGATAGAAGGAACATGACACTTTTGGGAGATTTAGTACTTTCAAATAAACTAGTCTTGTATGATCTTGAAAATCAGGCCATTGGATGGACTGAAT ATAACTGCTCTTCAAGCATCCAAGTGCAGGATGAACGGACTGGAACTGTACATTTAGTAGGCTACCACTATATTAATTCTGCTCGCAGTTTGAATGTGCA ATGGGCTATGTTGTTGTTGCTGCTGCTAAGTACACTGCTGCTCAGTTTAGTTTGCTGA
AA sequence Show only first row Show all	>Potri.014G146400.1 pacid=42762409 polypeptide=Potri.014G146400.1.p locus=Potri.014G146400 ID=Potri.014G146400.1.v4.1 annot-version=v4.1 MLMMMAEAQSRVLLLTMMISFTIVSANNGVFSVKYKYAGLQRSLSDLKAHDDQRQLRILAGVDLPLGGIGRPDILGLYYAKIGIGTPTKDYYVQVDTGSD IMWVNCIQCRECPKTSSLGIDLTLYNINESDTGKLVPCDQEFCYEINGGQLPGCTANMSCPYLEIYGDGSSTAGYFVKDVVQYARVSGDLKTTAANGSVI FGCGARQSGDLGSSNEEALDGILGFGKSNSSMISQLAVTGKVKKIFAHCLDGTNGGGIFVIGHVVQPKVNMTPLIPNQPHYNVNMTAVQVGHEFLSLPTD VFEAGDRKGAIIDSGTTLAYLPEMVYKPLVSKIISQQPDLKVHTVRDEYTCFQYSDSLDDGFPNVTFHFENSVILKVYPHEYLFPFEGLWCIGWQNSGVQ SRDRRNMTLLGDLVLSNKLVLYDLENQAIGWTEYNCSSSIQVQDERTGTVHLVGYHYINSARSLNVQWAMLLLLLLSTLLLSLVC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05840			Eukaryotic aspartyl protease f...		Potri.014G146400 [exp]	0	1
AT3G02890			RING/FYVE/PHD zinc finger supe...		Potri.003G091000 [exp]	1.41	0.8137
AT5G46550			DNA-binding bromodomain-contai...		Potri.001G355300 [exp]	5.83	0.7925
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Potri.006G034500 [exp]	6.70	0.7907
AT3G03140			Tudor/PWWP/MBT superfamily pro...		Potri.013G081400 [exp]	12.32	0.7645
AT3G06190		ATBPM2	BTB-POZ and MATH domain 2 (.1....		Potri.008G200700 [exp]	19.05	0.7390
AT1G17780			unknown protein		Potri.001G376800 [exp]	21.77	0.7638
AT3G11450			DnaJ domain ;Myb-like DNA-bind...		Potri.001G035800 [exp]	23.06	0.6959
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.017G017800 [exp]	28.42	0.7559
AT3G27260		GTE8	global transcription factor gr...		Potri.001G335000 [exp]	29.83	0.7495	GTE903
AT5G26760			unknown protein		Potri.015G010900 [exp]	32.24	0.7641

Compare expression of checked genes

Potri.014G146400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.