Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55200 52 / 1e-07 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G13690 46 / 1e-05 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G141900 [exp] 130 / 2e-37 ND / Potri.005G185500 [exp] 59 / 9e-10 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1) Potri.003G189850 [exp] 45 / 4e-05 AT5G56790 319 / 3e-99 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041284 [exp] 226 / 2e-74 AT1G55200 44 / 7e-05 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10037427 [exp] 155 / 2e-46 ND / Lus10018944 [exp] 54 / 3e-08 AT3G13690 332 / 2e-105 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10000773 [exp] 51 / 2e-07 AT5G56790 74 / 2e-14 Protein kinase superfamily protein (.1) Lus10006148 [exp] 46 / 2e-05 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10001996 [exp] 46 / 2e-05 AT3G13690 649 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G146500.1 pacid=42763526 polypeptide=Potri.014G146500.1.p locus=Potri.014G146500 ID=Potri.014G146500.1.v4.1 annot-version=v4.1 ATGATTGTTTGTATAGGAGGAGGAGATGGGGAGAGGGACGCATCGCCACCCCAACCCCAAAGCATTCGCAACGCCGGCATTTCTTTGGCTGACGTTTTGG TACCCAGGGGATCACCCAGTTCAACCCATGTAGTGATTGTGATGGATGCCTTGAGAGGGTTCTCCTGGGAGCCCTTCCTGTGGGCGCTTGACCATGTCAC TGGCACTGGCTACACTATCACCCTTCTTGGCGTAATGCCGTGGATCCCTCTTGCATTGTCGCTGAAGACATGGTTAGACGTCTGGACATTTGATCTTGGA GATTGGTCGGCACTCAAGGGTAGGGGTGAATGGAAGAATGACCAGAAGTCTCAGAAGATTCGTGGGATCATCCAGCTCTGCGACCAGAAAGGGGTGGTTC CTTGCATGAAAGTTGCAATGGGGCATCCCTTGAAGCTTGTGGTTCTCGAGCAAACCACAAGTCTTCATGCAACCTTTGTTGTTATCGACAGGCATCTGAA AAAGAACAAAGCATTCTATGCCGACAGACTGCCAAGCAATGCAGTTATAATGAACAGTGATGGAGGTGTTGACATGCTGAAAATCCGATCTACCGATCTC TCATGTTCAACTCCAGAACAATCCCCAGCAACTTTAAATATTCCACTGCCTCCTCAGATTATGATCTCCGAAGAGCTTTCTGTGCTTCTCAGGTCCAGAA TCCATCAACAGGCTGCAGATAATGATCATCAAAAAGACAACTAA
AA sequence Show only first row Show all	>Potri.014G146500.1 pacid=42763526 polypeptide=Potri.014G146500.1.p locus=Potri.014G146500 ID=Potri.014G146500.1.v4.1 annot-version=v4.1 MIVCIGGGDGERDASPPQPQSIRNAGISLADVLVPRGSPSSTHVVIVMDALRGFSWEPFLWALDHVTGTGYTITLLGVMPWIPLALSLKTWLDVWTFDLG DWSALKGRGEWKNDQKSQKIRGIIQLCDQKGVVPCMKVAMGHPLKLVVLEQTTSLHATFVVIDRHLKKNKAFYADRLPSNAVIMNSDGGVDMLKIRSTDL SCSTPEQSPATLNIPLPPQIMISEELSVLLRSRIHQQAADNDHQKDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55200			Protein kinase protein with ad...		Potri.014G146500 [exp]	0	1
AT1G01800			NAD(P)-binding Rossmann-fold s...		Potri.002G156866 [exp]	7.61	0.9701
AT1G53750		RPT1A	regulatory particle triple-A 1...		Potri.003G073600 [exp]	14.21	0.8718
					Potri.006G009300 [exp]	18.86	0.9650
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Potri.004G132500 [exp]	20.19	0.9029	LCOSC2.4
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Potri.009G138600 [exp]	21.79	0.9619
					Potri.009G020201 [exp]	28.70	0.9590
AT5G05800			unknown protein		Potri.014G061450 [exp]	35.15	0.9590
					Potri.006G021800 [exp]	37.32	0.8746
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.001G335200 [exp]	37.84	0.8828
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.005G224700 [exp]	37.97	0.9590	GY4.2

Compare expression of checked genes

Potri.014G146500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.