Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16920 456 / 2e-162 ATCTL2 chitinase-like protein 2 (.1) AT1G05850 454 / 8e-162 CTL1, HOT2, ERH2, ELP1, POM1, ATCTL1 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) AT3G12500 187 / 4e-57 PR-3, PR3, CHI-B, B-CHI, ATHCHIB PATHOGENESIS-RELATED 3, basic chitinase (.1) AT1G02360 174 / 2e-52 Chitinase family protein (.1) AT4G01700 165 / 5e-49 Chitinase family protein (.1) AT2G43570 101 / 8e-25 CHI "chitinase, putative", chitinase, putative (.1) AT2G43610 99 / 8e-24 Chitinase family protein (.1) AT2G43590 93 / 7e-22 Chitinase family protein (.1) AT2G43620 92 / 3e-21 Chitinase family protein (.1) AT3G54420 89 / 2e-20 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G141600 [exp] 446 / 1e-158 AT3G16920 458 / 4e-163 chitinase-like protein 2 (.1) Potri.014G111800 [exp] 181 / 2e-55 AT4G01700 422 / 1e-150 Chitinase family protein (.1) Potri.004G182000 [exp] 174 / 4e-52 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141800 [exp] 174 / 5e-52 AT3G12500 351 / 9e-121 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.002G186500 [exp] 171 / 3e-51 AT1G02360 413 / 2e-147 Chitinase family protein (.1) Potri.009G142300 [exp] 171 / 7e-51 AT3G12500 340 / 1e-116 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.004G182100 [exp] 171 / 1e-50 AT3G12500 306 / 7e-103 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141700 [exp] 170 / 2e-50 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142150 [exp] 162 / 1e-48 AT3G12500 365 / 8e-128 PATHOGENESIS-RELATED 3, basic chitinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037428 [exp] 473 / 5e-169 AT1G05850 489 / 1e-175 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10037430 [exp] 468 / 2e-167 AT1G05850 505 / 0.0 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10041278 [exp] 468 / 2e-167 AT1G05850 504 / 0.0 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10037737 [exp] 427 / 5e-151 AT3G16920 499 / 2e-179 chitinase-like protein 2 (.1) Lus10016872 [exp] 332 / 2e-115 AT3G16920 354 / 5e-124 chitinase-like protein 2 (.1) Lus10041282 [exp] 188 / 4e-60 AT1G05850 192 / 2e-62 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10041830 [exp] 183 / 2e-55 AT3G12500 402 / 4e-141 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10028377 [exp] 182 / 4e-55 AT3G12500 393 / 1e-137 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10009968 [exp] 171 / 3e-51 AT1G02360 409 / 1e-145 Chitinase family protein (.1) Lus10038026 [exp] 166 / 2e-49 AT1G02360 412 / 9e-147 Chitinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [poplar] [flax] Lysozyme PF00182 [poplar] [flax] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Potri.014G146600.1 pacid=42762737 polypeptide=Potri.014G146600.1.p locus=Potri.014G146600 ID=Potri.014G146600.1.v4.1 annot-version=v4.1 ATGATGAAGATTTCCATCTGGATCATTCTTGCACTTGCTTTGGTTAATTTAGCACTTGTTGTGAACGGAGATGATTCGGAGAAGACAATAGTGAAGACTG TGAAAGGAAAGAAATTGTGTAAAAGAGGATGGGAGTGCTTAGACTGGTCCGAGTACTGTTGTAATGAAACAATTTCTGATATCTTCCAGCCTTACCAGTT TGAGAACCTGTTTTCGAATAGGAATTCTCCTGTGGCACACGCTGTTGGATTCTGGGATTACCGGTCTTTCATTCTTGCTTCCACCAGTTTTCAGCATCTT GGGTTTTGTACCACCGGTGGCAAGGCTACGCAGATGAAGGAGCTTGCTGCTTTCCTTGCTCACGTTGGCTGCAAAACCTCCTGTGGTTATGGAGTCGCTA CTGGAGGACCATTGGCCTGGGGTCTTTGCTACAACAAGGAAATGAGTCCTAGCCAGACATACTGTGATGATTTTTACAAATACACCTATCCTTGTACTCC TGGAGCTGAATACTATGGCCGAGGTGCCATACCAATCTTCTGGAACTATAACTATGGAGCTGCTGGAGAAGCTCTGAAGGAGGATTTGTTGAGCCATCCT GAGTACATAGAACAGAATGCCACCCTTGCCTTCAAGGCTGCAATGTGGAGGTGGTATACCCCGATAAAGAAATCACAGCCTTCAGCCCATGAAGCCTTTC TTGGCAAATGGAAGCCCACCAAGAATGATACCCTTGCTAAGCGGGTTCCTGGTTTTGGCACAACAATGAATGTTCTCTATGGGGATCAAGTTTGCGGCCA GGGTGATATAGATGCCATGAACAACTTCATCTCCCATTATCTATATTACCTTGACTTGCTGGGTTTGAATAGAGAGGATGCTGGGCCCCATGAATACCTC ACCTGTGCCGAGCAGGTTGCATTTAATCCATCTACTTCCAGTCCTTCAGCATCCTCCTGA
AA sequence Show only first row Show all	>Potri.014G146600.1 pacid=42762737 polypeptide=Potri.014G146600.1.p locus=Potri.014G146600 ID=Potri.014G146600.1.v4.1 annot-version=v4.1 MMKISIWIILALALVNLALVVNGDDSEKTIVKTVKGKKLCKRGWECLDWSEYCCNETISDIFQPYQFENLFSNRNSPVAHAVGFWDYRSFILASTSFQHL GFCTTGGKATQMKELAAFLAHVGCKTSCGYGVATGGPLAWGLCYNKEMSPSQTYCDDFYKYTYPCTPGAEYYGRGAIPIFWNYNYGAAGEALKEDLLSHP EYIEQNATLAFKAAMWRWYTPIKKSQPSAHEAFLGKWKPTKNDTLAKRVPGFGTTMNVLYGDQVCGQGDIDAMNNFISHYLYYLDLLGLNREDAGPHEYL TCAEQVAFNPSTSSPSASS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Potri.014G146600 [exp]	0	1
AT4G25780			CAP (Cysteine-rich secretory p...		Potri.018G096028 [exp]	1.41	0.7819
AT4G36195			Serine carboxypeptidase S28 fa...		Potri.007G015300 [exp]	1.41	0.7710
AT5G45470			Protein of unknown function (D...		Potri.015G107950 [exp]	3.31	0.7175
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.003G009000 [exp]	6.63	0.7552
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Potri.008G092300 [exp]	8.83	0.7118
AT5G65470			O-fucosyltransferase family pr...		Potri.007G011000 [exp]	13.41	0.7305
AT1G61900			unknown protein		Potri.011G003000 [exp]	17.43	0.6832
AT5G59845			Gibberellin-regulated family p...		Potri.014G020100 [exp]	20.59	0.7307
AT2G13610		ABCG5	ATP-binding cassette G5, ABC-2...		Potri.005G064300 [exp]	21.90	0.6947	PtrWBC5-1
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Potri.006G270900 [exp]	29.06	0.7520	Pt-ATCSLC05.4

Compare expression of checked genes

Potri.014G146600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.