Plant FIBer expression Database

Potri.014G146900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10830 512 / 0 Z-ISO1.2, Z-ISO1.1, Z-ISO 15-cis-zeta-carotene isomerase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021965
[exp]
514 / 0 AT1G10830 491 / 1e-174 15-cis-zeta-carotene isomerase (.1.2)
Lus10041258
[exp]
490 / 3e-174 AT1G10830 488 / 1e-173 15-cis-zeta-carotene isomerase (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0115 Steroid_dh PF07298 NnrU NnrU protein
Representative CDS sequence
>Potri.014G146900.1 pacid=42762848 polypeptide=Potri.014G146900.1.p locus=Potri.014G146900 ID=Potri.014G146900.1.v4.1 annot-version=v4.1
ATGGCCTCCTCTCTTCTTCTCTCGAACCCATTTTTGACCTCACCCCACAATCCAAACAACCTAACTCGTAGACAACAACCTCTTACGCTTCGGCCTTCCT
CAGCTTTTACTCTCCTAAGTCTAACAAAACCCTCCAATAATAATAATAATCCAAAATTCCTCAAACCCACCGTTCCTTTTCTGGGTTTCAAGAAATTTGC
TACAAGAATCTCCACCAAAGATGCTGACACCGATACCTCTGTCCCCCCACCACTTGCAGGTGAGGATTCAGCCGCGTTCGAATTGGGGAAGCAGAAGGTA
TCTTCTTGGATATATTTCAGTTTGATTTTGGGTGTTGTTTTGTTTGTGCTTGACGTGGCTTGGATTGATAACTCTACTGGGTTCGGAAAGGATTTCATCA
GTGCTGTTTCGAGTCTCTCAGAAAGCCCTGAGGTGGTTATGTTCATCCTTATTCTAATTTTCGCCACCGTCCACAGTGGCCTGGCAAGTCTCAGAGACAT
GGGCGAAAAACTTATTGGAGAACGTGCATTTCGTGTTTTGTTTGCAGGAGTTTCTCTTCCATTGGCTGTTAGCACTGTTGTGTACTTCATCAATCACAGA
TATGACGGCATCCAGTTATGGGAGCTTCAAAGTGCTCCTGCGGTACATCAACTTGTGTGGCTTTCTAATTTTATCTCCTTCCTTTTCCTGTATCCTTCAA
CTTTTAATCTATTAGAAGTAGCGGCAGTTGACAAGCCTAAAATGCATCTCTGGGAAACTGGAATAATGAGAATTACCAGACACCCGCAGATGGTTGGGCA
GGTGATGTGGTGCTTGGCTCATACAGTTTGGATTGGGAACTCTGTGACTGTTGCTGCATCTCTTGGTTTAATTGGACACCATTTATTTGGTGTCTGGAAT
GGGGACAGGAGATTGGCAACGAGATATGGGGAGGCTTTTGAAGCTGTAAAGAAGCGAACTAGCATAGTCCCTTTTGCAGCTATCCTTGATGGTCGTCAAA
AGTTACCTAAAGATTATTACAAGGAATTTTTGCGGTTGCCATATTTGTCAATCACTGCATTGACTCTAGGTGCATACTTTGCCCACCCGCTTATGCAGGC
TGCCAGTTTCCGGCTTCACTGGTAG
AA sequence
>Potri.014G146900.1 pacid=42762848 polypeptide=Potri.014G146900.1.p locus=Potri.014G146900 ID=Potri.014G146900.1.v4.1 annot-version=v4.1
MASSLLLSNPFLTSPHNPNNLTRRQQPLTLRPSSAFTLLSLTKPSNNNNNPKFLKPTVPFLGFKKFATRISTKDADTDTSVPPPLAGEDSAAFELGKQKV
SSWIYFSLILGVVLFVLDVAWIDNSTGFGKDFISAVSSLSESPEVVMFILILIFATVHSGLASLRDMGEKLIGERAFRVLFAGVSLPLAVSTVVYFINHR
YDGIQLWELQSAPAVHQLVWLSNFISFLFLYPSTFNLLEVAAVDKPKMHLWETGIMRITRHPQMVGQVMWCLAHTVWIGNSVTVAASLGLIGHHLFGVWN
GDRRLATRYGEAFEAVKKRTSIVPFAAILDGRQKLPKDYYKEFLRLPYLSITALTLGAYFAHPLMQAASFRLHW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G10830 Z-ISO1.2, Z-ISO... 15-cis-zeta-carotene isomerase... Potri.014G146900
[exp]
0 1
AT1G09130 ATP-dependent caseinolytic (Cl... Potri.013G017166
[exp]
2.44 0.9859
AT1G49970 SVR2, NCLPP5, C... SUPPRESSOR OF VARIEGATION 2, N... Potri.009G089300
[exp]
2.44 0.9802 Pt-CLPR1.1
AT4G22260 IM1, IM IMMUTANS, Alternative oxidase ... Potri.011G021800
[exp]
3.87 0.9724
AT4G22240 Plastid-lipid associated prote... Potri.004G003200
[exp]
6.32 0.9680 Pt-CHRC.3
AT4G37000 ATRCCR, ACD2 ARABIDOPSIS THALIANA RED CHLOR... Potri.007G043700
[exp]
7.41 0.9640
AT4G25370 Double Clp-N motif protein (.1... Potri.012G129800
[exp]
7.48 0.9711
AT3G51880 AtHMGB1, NFD1, ... NUCLEOSOME/CHROMATIN ASSEMBLY ... Potri.010G189900
[exp]
7.74 0.9579
AT2G28800 ABL3, ALB3 ALBINO 3, 63 kDa inner membran... Potri.001G237800
[exp]
8.12 0.9736 ALB3.2
AT1G68830 STN7 STT7 homolog STN7 (.1) Potri.008G116800
[exp]
8.48 0.9726
AT5G46420 16S rRNA processing protein Ri... Potri.001G353800
[exp]
9.16 0.9714

Potri.014G146900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.