Plant FIBer expression Database

TIF3.5 (Potri.014G147100) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol TIF3.5
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10840 545 / 0 TIF3H1 translation initiation factor 3 subunit H1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G233500
[exp]
598 / 0 AT1G10840 555 / 0.0 translation initiation factor 3 subunit H1 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020427
[exp]
557 / 0 AT1G10840 570 / 0.0 translation initiation factor 3 subunit H1 (.1.2)
Lus10007054
[exp]
547 / 0 AT1G10840 558 / 0.0 translation initiation factor 3 subunit H1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0366 JAB PF01398 JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Representative CDS sequence
>Potri.014G147100.1 pacid=42763890 polypeptide=Potri.014G147100.1.p locus=Potri.014G147100 ID=Potri.014G147100.1.v4.1 annot-version=v4.1
ATGGCTAATACTACCACTCCCACAATGGCAAGGTCTTTCCTTCAAGTAGCAGCCACAGAGGAGGTTGCTCCTCCTCTCCGTGCTGTTCAGATCGAAGGAC
TGGCTGTGTTGAAAATAATCAAACACTGCAAGGAGTTTTCACCGTCTTTAGTGACTGGGCAGCTTCTAGGATTGGATGTTGGTAGCGTTCTTGAAGTTAC
CAACTGTTTCCCTTTCCCGATTAGGGAAGAGGATGAGGAGATTGAAGCAGAAGGTGCTAATTACCAGCTTGAGATGATGAGGTGCTTGAGAGAGGTCAAT
GTCGACAATAACACTGTTGGATGGTATCAGTCAATGTTGTTTGGTTGTTTTCAAACAGTGGAATTGATCGAGACATTTATGAATTACCAGGAAAATATTA
GACGGTGTGTTTGTATTATTTATGATCCTTCAAGAGCTAACCAAGGTGTTTTAGCTCTCAAGGCTTTGAAGCTTTCTGATTCTTTCATGGATCTGTATCG
CAATAACAATTTTACTGGAGAGAAGTTGAGGGAGAAAAACTTGTCATGGGTGGATATTTTTGAGGAAATTCCTATCAAAGTTTCAAATTCTGCACTTATT
AGTGCCTTTATGACTGAGCTAGAAAATGATACACCAGTGACCCAGTGTGATTATGACCGCCTGCAATTATCAACCAGTCCATATTTGGAAAGGAATGTAG
AATTTTTGATTGAATGCATGGATGATTTGTCAATGGAGCAGCAGAAGTTCCAATATTACTATCGGAACCTGTCACGCCAGCAAGCTCAGCAGCAAGCATG
GCTTCAAAAGAGAAGGTCAGAGAACATGTCACGCAAAGCTGCAGGAGAAGAACCCTTGCCTGAGGAGGATCCTTTAAATCCCATCTTCAAACCAATCCCA
GAACCATCACGGTTGGATAGTTTCCTGATAACCAATCAAATAGCAAATTATTGTAACCAAATCAATGGGGTTTCTGGGCAGAGCTTCAGCCGATTATATT
TGATGAAGGCTTTGCATGAGAATTGA
AA sequence
>Potri.014G147100.1 pacid=42763890 polypeptide=Potri.014G147100.1.p locus=Potri.014G147100 ID=Potri.014G147100.1.v4.1 annot-version=v4.1
MANTTTPTMARSFLQVAATEEVAPPLRAVQIEGLAVLKIIKHCKEFSPSLVTGQLLGLDVGSVLEVTNCFPFPIREEDEEIEAEGANYQLEMMRCLREVN
VDNNTVGWYQSMLFGCFQTVELIETFMNYQENIRRCVCIIYDPSRANQGVLALKALKLSDSFMDLYRNNNFTGEKLREKNLSWVDIFEEIPIKVSNSALI
SAFMTELENDTPVTQCDYDRLQLSTSPYLERNVEFLIECMDDLSMEQQKFQYYYRNLSRQQAQQQAWLQKRRSENMSRKAAGEEPLPEEDPLNPIFKPIP
EPSRLDSFLITNQIANYCNQINGVSGQSFSRLYLMKALHEN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G10840 TIF3H1 translation initiation factor ... Potri.014G147100
[exp]
0 1 TIF3.5
AT4G16720 Ribosomal protein L23/L15e fam... Potri.003G078700
[exp]
2.64 0.8663 Pt-RPL15.4
AT5G52370 unknown protein Potri.001G246800
[exp]
7.14 0.8429
AT2G19740 Ribosomal protein L31e family ... Potri.009G064100
[exp]
9.89 0.8660
AT4G12600 Ribosomal protein L7Ae/L30e/S1... Potri.019G087100
[exp]
10.09 0.8556
AT3G62840 Small nuclear ribonucleoprotei... Potri.014G129100
[exp]
10.19 0.8523
AT1G56070 LOS1, AT1G56075... LOW EXPRESSION OF OSMOTICALLY ... Potri.005G098100
[exp]
10.48 0.8562 LOS1.3
AT4G35490 MRPL11 mitochondrial ribosomal protei... Potri.007G058600
[exp]
12.64 0.8344
AT3G49910 Translation protein SH3-like f... Potri.007G055900
[exp]
13.41 0.8433
AT4G21150 HAP6 HAPLESS 6, ribophorin II (RPN2... Potri.005G226100
[exp]
13.74 0.7991
AT4G21705 Tetratricopeptide repeat (TPR)... Potri.011G051500
[exp]
14.45 0.8494

Potri.014G147100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.