Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28040 1156 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G56370 707 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G01890 647 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G12460 442 / 4e-140 Leucine-rich repeat protein kinase family protein (.1) AT1G62950 426 / 8e-134 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G07280 400 / 2e-121 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G28650 395 / 3e-121 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G49670 386 / 6e-118 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 384 / 3e-117 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G20140 387 / 2e-116 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G233600 [exp] 1581 / 0 AT3G28040 1116 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G091000 [exp] 745 / 0 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G058600 [exp] 724 / 0 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G137000 [exp] 710 / 0 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G108600 [exp] 684 / 0 AT5G01890 1115 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G117500 [exp] 471 / 2e-151 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G114500 [exp] 461 / 1e-146 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G021700 [exp] 415 / 1e-128 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G048800 [exp] 395 / 5e-121 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037276 [exp] 980 / 0 AT3G28040 1013 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10035687 [exp] 962 / 0 AT3G28040 1021 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10022738 [exp] 699 / 0 AT5G01890 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10030526 [exp] 696 / 0 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014174 [exp] 691 / 0 AT5G01890 1032 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10012877 [exp] 690 / 0 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025139 [exp] 649 / 0 AT3G56370 1021 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025223 [exp] 646 / 0 AT3G56370 1026 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10006675 [exp] 458 / 3e-146 AT1G12460 984 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10000814 [exp] 393 / 2e-120 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.014G147300.1 pacid=42762544 polypeptide=Potri.014G147300.1.p locus=Potri.014G147300 ID=Potri.014G147300.1.v4.1 annot-version=v4.1 ATGGGGTTTTCCCATTTGTTGCTATATTTCCTGGTTTCTTCAGTTGCTTCGCTTAGAGGTTGCACGGGAAGTGATAGTGTGCCGATACAGATCAATGATG ATGTCTTAGGGCTGATTGTTTTCAAGTCAGACCTTAGTGATCCATCTTCCTATCTCAGCTCATGGAACGAAGATGATGACTCCCCGTGTTCATGGAAGTT CATAGAGTGCAATCCCGTGAGCGGCAGGGTTTCTCAAGTCTCACTTGATGGGTTGGGATTGTCAGGAAGATTGGGTAAAGGGCTCCAAAAGTTGCAGCAT GTGAAGACATTATCATTGTCCCATAACAATTTTAGCGGTGACTTTAGTCTTGAGTTTGGTCTCATTTCAAGTCTTGAAAGTCTTAACCTCAGTCACAACA GTCTTTCAGGCCTCATTCCATCTTTTCTTGACAATATGAGCTCCCTTAAGTTTCTTGATCTTTCTGAGAATTCATTCACAGGACCACTCCCTGATGATCT TTTTCGAAACTCCTTTTCCCTTCGTTATCTTTCTTTAGCAGGGAATTTGCTTCAAGGGCCAATTCCTAGTTCTCTATTTAGCTGCTCTTCTTTGAACACT ATCAATCTGTCCAACAACCAGTTCTCCGGTGACCCAGATTTTGTTACTGGGACTTGGTCATTGGAGCGGCTTCGAAAACTGGATCTTTCACACAACGAAT TTTCCGGGTCCGTGCCACAAGGGGTATCGGCCATTCACAACTTGAAAGAGCTCCACTTACAGGGAAATCGCTTTTCCGGGCCACTACCTGTAGATATTGG ACTGTGCCGGCACTTGAATAGATTGGATTTAAGCAGCAATCTTTTTAGTGGAGCACTGCCGGAGTCTCTTCAGGGGCTGAGTTCAATAAACTATTTCAGT TTATCCAAGAATATGTTGACAGGTGAGTTCCCTCGGTGGATTGGTAGCCTGAGCAACCTGGAATACCTGGACTTGTCAAGCAATGCTCTAACTGGTAGCA TCTCATCATCCATTGGTGACTTGAAATCACTGCGCTACTTGAGTTTGTCCAATAACAAGCTCCTTGGCAACATCCCCGCCTCAATCGTTTCCTGTACGAT GTTATCAGCGATTCGGTTGAGAGGTAACAGCTTTAATGGTAGCATACCAGAAGGCTTGTTTGATCTAGGGCTAGAGGAAGTAGATTTTTCACACAATGGA TTGATAGGTTCAATTCCATCAGGTTCAAGTACTTTCTTTACATCTCTTCACACACTGGATCTTTCAAGGAACAATCTCACAGGACATATTCCTGCAGAAA TGGGTCTCTCATCTGATTTGAGATACTTGAACTTGTCCTGGAACAACCTGGAATCAAGAATGCCACCTGAGCTTGGCTACTTTCAGAACTTGACAGTTTT GGATCTTCGAAGCAATGCTCTAGCTGGCTCAATTCCTGCAGATATATGCGAGTCGGGAAGTTTGAACATCCTTCAATTGGATGGAAATTCATTGGTGGGC CAAGTCCCTGAAGAGATTGGAAATTGTTCATCACTGTATTTGCTGAGCTTGTCCCAGAATAACTTGAGCGGTTCCATTCCCAAGTCCATTTCAAGGCTAG ACAAGCTCAAGATTCTGAAATTGGAATTCAATGAGCTGACTGGAGAGGTACCACAAGAGCTTGGAAAACTGGAGAATCTCCTGGCTGTAAATATATCCTA TAACAAGCTCATAGGCAGGCTTCCTGTTCGGGGCATATTTCCAAGTTTGGATCAAAGTGCGTTGCAGGGGAATTTGGGAATTTGCTCACCCTTGTTGAAG GGACCATGTAAGATGAATGTTCCCAAGCCTCTTGTCCTTGATCCAAATGCCTATGGAAATCAAGGGGATGGTCAGAAACCAAGAAGTGCATCCTCTCGCC CGGCAAGGTTCCATCACCACATGTTCCTCAGTGTTTCGGCTATCATTGCAATTTCAGCAGCTATATTCATTATGTTTGGAGTGATACTCATAAGCCTGCT AAATGTATCTGTCCGGAAGAGGCTTGCATTTGTGGACCATGCCTTGGAAAGCATGTGCTCGAGCTCTTCCAAGTCTGGAAATCTAGTCACAGGCAAGCTG GTCCTGTTCGATTCGAAATCATCGCCTGATTGGATCAATAGTCCAGAATCACTCCTTAATAAGGCTGCTGAGATAGGTCAAGGAGTTTTTGGAACTGTTT ACAAGGTCTCACTGGGTTCAGAGGCAAGGATGGTAGCAATTAAAAAGCTCATTACTTCAAACATTATCCAATATCCAGAAGATTTTGATCGAGAAGTTCG AGTGTTAGGAAAGGCAAGGCACCCAAATCTCTTGTCATTAAAAGGGTATTACTGGACTCCTCAGTTGCAGCTATTGGTATCAGAATATGCACCTAATGGC AGCTTACAATCCAAACTCCATGAAAGGCTAACGTCTACTCCACCTCTTTCATGGGCTAACAGATTGAAGATTGTGCTTGGAACAGCAAAGGGACTAGCAC ACTTGCATCACTCTTTCCGTCCACCCATCATTCATTATAACATAAAACCAAGCAACATCCTCCTTGACGAAAATTTCAACCCAAAGATTTCGGATTTTGG ACTTGCAAGGCTCTTGACAAAGCTGGATAGGCATGTTATGAGTAGTAGATTTCAAAGTGCATTGGGATATGTGGCACCAGAACTAGCATGCCAGAGCTTG AGGATCAATGAGAAGTGTGATATATATGGTTTTGGAGTCTTGATTCTTGAGCTAGTAACTGGAAGAAGGCCGGTGGAATACGGTGAAGACAACGTGGTGA TACAAAATGATCATGTGAGGGTTTTGCTTGAACAAGGTAATGCCTTGGATTGTGTAGATCCAAGCATGGGGGATTATCCTGAGGATGAGGTAATGCCAGT GCTCAAATTGGCCCTTGTGTGCACCTCTCAAATACCTTCTAGTAGGCCTTCCATGGCAGAAGTGGTGCAAATATTGCAGGTCATCAGGACCCCAGTTCCA CAAAGAATGGAGATTTTCTAA
AA sequence Show only first row Show all	>Potri.014G147300.1 pacid=42762544 polypeptide=Potri.014G147300.1.p locus=Potri.014G147300 ID=Potri.014G147300.1.v4.1 annot-version=v4.1 MGFSHLLLYFLVSSVASLRGCTGSDSVPIQINDDVLGLIVFKSDLSDPSSYLSSWNEDDDSPCSWKFIECNPVSGRVSQVSLDGLGLSGRLGKGLQKLQH VKTLSLSHNNFSGDFSLEFGLISSLESLNLSHNSLSGLIPSFLDNMSSLKFLDLSENSFTGPLPDDLFRNSFSLRYLSLAGNLLQGPIPSSLFSCSSLNT INLSNNQFSGDPDFVTGTWSLERLRKLDLSHNEFSGSVPQGVSAIHNLKELHLQGNRFSGPLPVDIGLCRHLNRLDLSSNLFSGALPESLQGLSSINYFS LSKNMLTGEFPRWIGSLSNLEYLDLSSNALTGSISSSIGDLKSLRYLSLSNNKLLGNIPASIVSCTMLSAIRLRGNSFNGSIPEGLFDLGLEEVDFSHNG LIGSIPSGSSTFFTSLHTLDLSRNNLTGHIPAEMGLSSDLRYLNLSWNNLESRMPPELGYFQNLTVLDLRSNALAGSIPADICESGSLNILQLDGNSLVG QVPEEIGNCSSLYLLSLSQNNLSGSIPKSISRLDKLKILKLEFNELTGEVPQELGKLENLLAVNISYNKLIGRLPVRGIFPSLDQSALQGNLGICSPLLK GPCKMNVPKPLVLDPNAYGNQGDGQKPRSASSRPARFHHHMFLSVSAIIAISAAIFIMFGVILISLLNVSVRKRLAFVDHALESMCSSSSKSGNLVTGKL VLFDSKSSPDWINSPESLLNKAAEIGQGVFGTVYKVSLGSEARMVAIKKLITSNIIQYPEDFDREVRVLGKARHPNLLSLKGYYWTPQLQLLVSEYAPNG SLQSKLHERLTSTPPLSWANRLKIVLGTAKGLAHLHHSFRPPIIHYNIKPSNILLDENFNPKISDFGLARLLTKLDRHVMSSRFQSALGYVAPELACQSL RINEKCDIYGFGVLILELVTGRRPVEYGEDNVVIQNDHVRVLLEQGNALDCVDPSMGDYPEDEVMPVLKLALVCTSQIPSSRPSMAEVVQILQVIRTPVP QRMEIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28040			Leucine-rich receptor-like pro...		Potri.014G147300 [exp]	0	1
AT2G06520		PSBX	photosystem II subunit X (.1)		Potri.006G144000 [exp]	10.39	0.9701
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G096200 [exp]	14.42	0.9687
AT2G12462			unknown protein		Potri.006G061400 [exp]	23.10	0.9678
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G096066 [exp]	26.17	0.9686
AT3G02645			Plant protein of unknown funct...		Potri.003G205900 [exp]	32.31	0.9674
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Potri.001G056200 [exp]	33.46	0.9676
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Potri.018G089500 [exp]	36.55	0.9674
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Potri.013G052900 [exp]	41.26	0.9634
AT3G26060		ATPRXQ ,ATPRX Q	peroxiredoxin Q, Thioredoxin s...		Potri.018G063300 [exp]	42.42	0.9243	Pt-PRXQ.2,PtrcPrx_Q.2
AT2G45180			Bifunctional inhibitor/lipid-t...		Potri.018G025900 [exp]	43.11	0.9652

Compare expression of checked genes

Potri.014G147300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.