Plant FIBer expression Database

Potri.014G147600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10800 73 / 2e-16 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041270
[exp]
82 / 3e-18 AT1G10800 125 / 1e-36 unknown protein
Lus10037441
[exp]
80 / 1e-17 AT1G10800 119 / 3e-34 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G147600.1 pacid=42763581 polypeptide=Potri.014G147600.1.p locus=Potri.014G147600 ID=Potri.014G147600.1.v4.1 annot-version=v4.1
ATGAATAACCCACCGAGAATCACCGGTTCTTCAGGAATCCTGCAATCTCAACCTCCAAGTGATTCCATCTCTGTTGAAACAGTAGAGCACTTGGTCCAAA
ATCTGATCAAAAGCCGGCACAGAAGGCAAGAATGGATGCACCTCTGCAATCCTAAACTAGTACTAGACCTGAATAGAGAACCATGGAGAAACCACTTAAT
CAAGTTCCTGGAATCAACCCCAGTTCATGTTTTTACAATCTCACTGCTTCTCCTTGACGTCATCTTAACTGTCCTTGAACTTTCATCTTCTTTACAATCA
TGCACCCCGGAAGAAGACCATTATAAGAAAAACAAAGTTTGGTACCATCTGGCAGGGATTTGTATACTGAGCCTCCTTTCTGCCAAGTCAGTTGCTCTAG
TTGTGGGGTTTGGCAGCTCCTTCTTCAAGCGGCCAGGTTATGTTGTCGATGGCGCAGTTGTTATCGGAGCATTATTCTTGGAAACGTTTTTGGGGACGAA
GGGTGGAGGATTGCTTGTAGTCGTGAGTTTATGGCGAGTTGTGAGGCTAGTGGAGAGCGCGTTTGAGTTGAGTGATGAAGCTATTGAAGCACAGATTGAA
GGAATACTAAGCCAGTTTGAAGCACTTAGCAATGAGAATTCAAGGCTGTCGCAGACAATCGCAGAGAAAGATAGTATGATAGAGAAGCTCCAAGAGATAA
TAGAGAAGCTAGAAAAAGAATTGGATCAGTATAGATCGACACGCTTGTGTTGTGACCACTGA
AA sequence
>Potri.014G147600.1 pacid=42763581 polypeptide=Potri.014G147600.1.p locus=Potri.014G147600 ID=Potri.014G147600.1.v4.1 annot-version=v4.1
MNNPPRITGSSGILQSQPPSDSISVETVEHLVQNLIKSRHRRQEWMHLCNPKLVLDLNREPWRNHLIKFLESTPVHVFTISLLLLDVILTVLELSSSLQS
CTPEEDHYKKNKVWYHLAGICILSLLSAKSVALVVGFGSSFFKRPGYVVDGAVVIGALFLETFLGTKGGGLLVVVSLWRVVRLVESAFELSDEAIEAQIE
GILSQFEALSNENSRLSQTIAEKDSMIEKLQEIIEKLEKELDQYRSTRLCCDH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G10800 unknown protein Potri.014G147600
[exp]
0 1
AT1G26820 RNS3 ribonuclease 3 (.1) Potri.008G086800
[exp]
1.00 0.9346 S.4
AT5G01930 MAN6, AtMAN6 endo-beta-mannase 6, Glycosyl ... Potri.016G138600
[exp]
3.16 0.8898
AT3G61490 Pectin lyase-like superfamily ... Potri.003G131700
[exp]
4.24 0.8877
AT1G12260 NAC ANAC007, VND4, ... VASCULAR RELATED NAC-DOMAIN PR... Potri.012G126500
[exp]
4.89 0.8692 NAC037
AT1G20850 XCP2 xylem cysteine peptidase 2 (.1... Potri.002G005700
[exp]
5.29 0.8855
AT1G23460 Pectin lyase-like superfamily ... Potri.011G159801
[exp]
6.32 0.8742
AT2G45420 AS2 LBD18, ASL20 LOB domain-containing protein ... Potri.014G070400
[exp]
7.14 0.8063 LBD18.1
AT4G00230 XSP1 xylem serine peptidase 1 (.1) Potri.002G151900
[exp]
9.16 0.8404
AT5G61750 RmlC-like cupins superfamily p... Potri.015G109600
[exp]
11.95 0.8224
AT1G20850 XCP2 xylem cysteine peptidase 2 (.1... Potri.005G256000
[exp]
13.41 0.8259 XCP2.1

Potri.014G147600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.