Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13990 533 / 0 Exostosin family protein (.1) AT2G32750 527 / 0 Exostosin family protein (.1) AT2G20370 518 / 8e-179 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT2G29040 508 / 9e-174 Exostosin family protein (.1) AT2G32740 470 / 3e-162 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1) AT2G31990 442 / 2e-151 Exostosin family protein (.1) AT1G63450 359 / 2e-116 RHS8 root hair specific 8 (.1) AT5G41250 342 / 3e-111 Exostosin family protein (.1) AT1G68470 328 / 5e-107 Exostosin family protein (.1) AT5G62220 322 / 6e-104 ATGT18 glycosyltransferase 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G321000 [exp] 573 / 0 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.009G032500 [exp] 550 / 0 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 525 / 0 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.001G105300 [exp] 339 / 1e-109 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.012G130700 [exp] 327 / 8e-106 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.001G382200 [exp] 325 / 1e-105 AT1G68470 530 / 0.0 Exostosin family protein (.1) Potri.001G381900 [exp] 323 / 1e-104 AT1G68470 528 / 0.0 Exostosin family protein (.1) Potri.015G132600 [exp] 312 / 4e-100 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.001G120800 [exp] 289 / 6e-92 AT4G22580 593 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001028 [exp] 560 / 0 AT4G13990 499 / 1e-173 Exostosin family protein (.1) Lus10007426 [exp] 527 / 0 AT2G32750 505 / 5e-176 Exostosin family protein (.1) Lus10006694 [exp] 526 / 0 AT4G13990 617 / 0.0 Exostosin family protein (.1) Lus10016532 [exp] 524 / 0 AT2G29040 546 / 0.0 Exostosin family protein (.1) Lus10010677 [exp] 521 / 0 AT2G32750 497 / 7e-173 Exostosin family protein (.1) Lus10001578 [exp] 521 / 1e-180 AT2G29040 566 / 0.0 Exostosin family protein (.1) Lus10004967 [exp] 520 / 4e-180 AT2G29040 573 / 0.0 Exostosin family protein (.1) Lus10024961 [exp] 520 / 7e-180 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10022862 [exp] 517 / 9e-179 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10007037 [exp] 452 / 2e-155 AT4G13990 540 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.014G147800.2 pacid=42763948 polypeptide=Potri.014G147800.2.p locus=Potri.014G147800 ID=Potri.014G147800.2.v4.1 annot-version=v4.1 ATGGAGAGACTAGCCGTTATCCGAAACTGGTTTGTCTTCCTTGTTGCCTTCTCTTTCTTCGTTGTGTTTTTTAAGGCTTTTGATTATTCTGTTTTAAGTG CCGATGGAACAAACAGCGCCACCTCTTTAATCAGCGTCTTTGTCAATTCCTTTAACAATCTCCATGCCCATAAACCTAATCACTCTCTTGATGTCCCTCA AATGTTCAACCAAAACGCTTCTCCTGATCCATTAGTTGATACTGATAATCCTTTTATTGATGTAATTGAGTCTCTTGATCACGCAAATAATCTTGCTGTG AACAAGAATACTACATTGGCTGCGAGAACCAAGAGACCAGCAGATTCTTGCGAGGGTCGTTACATATATGTTCATCATCTTCCTCGCCGATTCAATGATG ATGTACTGAAAAATTGCTCAGTACTTGTGAAATGGTTAGACATGTGCCCGTTCTTGAAGAACTCGGGCTTTGGTCCTCAGGTTGAGAATTCTGAGGGGGT TTTGTCCGAAAAGAGTTGGTTTACAACCAACCAGTTCCTTTTAGAAGTCATGTTTCATGAGAGGATGAAGAAGTACAAGTGTTTGACTAATAACTCATCG TTCGCCAATGCCATTTATGTGCCGTTCTACGCTGGCTTGGATGCCGGACGCTACCTTTGGGGTTACAACATATCAATGAGGGACTCTTTAGGTTCTGATC TTGTCAAGTGGCTTGCGCAGCAGCCTGAATGGAAAAGGATGTGGGGAAGAGACCATTTCTTTGTTTTGGGTAGGATTGGTTGGGATTTTCGAAGACAAAC TGATCACGACTCCGATTGGGGTAGCAAGCTTATGACCTTGCCTGAATCTATGAACCTGACAGCGTTGTCAATTGAAACAACCTCATGGAGCAATGAATTT GCAATACCATATCCCACATATTTCCATCCTTCAAGTGACGATGAGGTATTCCAGTGGCAAAACAGAATGCAGAGCCATAACAGGCGCTACCTGTTTGCTT TCGCAGGCGCCCCGAGACCTAGTGCGAACGATTCTATACGAAAGGAGATTATCCACCAGTGTTTAGCTTCAAGGAGGACATGCAATTTTCTTCGTTGTAA TTCTGGGGGCGAAAGCAGATGTGATAACCCAGCTGAAGTGATTAAAGTGTTTCAAGACTCGGTTTTCTGCTTACAGCCTCCCGGGGACTCCTACACCAGG AGATCGATTTTCGACTCGATTTTGGCTGGTTGCATTCCAGTCTTCTTCCATCCATTCTCTGCTTACGCGCAGTATACATGGCATTTACAGAGGGATTACT GGAGATATTCTGTGTTCATACCAATCGACCTAGTAAAAGATGGGTTTGTCAGCATCAAGCAGGTATTACTTCAAATTTCGGACAACGAAATGTTGGCAAT GAGAAAGGAGGTCATAAAGCTGATCCCAAGAGTAATATATGCAGATCCCAGGTCTAAATTACAGACCCTTGAAGATGCATTCGACATAACATTGAAGGGA GTCCTGCATAGAATAGGAAAAGTGAGAAAAAATATCAACAAGGGGAGGGATCCTAGTAATGGTTTTGCAGAAGAGAATAGCTGGAAGATGAAATTATCTG GGATTGGAGTGGAAGAAGAGTGGGATCATTTCACTGATACTTCAATGAGATATTAA
AA sequence Show only first row Show all	>Potri.014G147800.2 pacid=42763948 polypeptide=Potri.014G147800.2.p locus=Potri.014G147800 ID=Potri.014G147800.2.v4.1 annot-version=v4.1 MERLAVIRNWFVFLVAFSFFVVFFKAFDYSVLSADGTNSATSLISVFVNSFNNLHAHKPNHSLDVPQMFNQNASPDPLVDTDNPFIDVIESLDHANNLAV NKNTTLAARTKRPADSCEGRYIYVHHLPRRFNDDVLKNCSVLVKWLDMCPFLKNSGFGPQVENSEGVLSEKSWFTTNQFLLEVMFHERMKKYKCLTNNSS FANAIYVPFYAGLDAGRYLWGYNISMRDSLGSDLVKWLAQQPEWKRMWGRDHFFVLGRIGWDFRRQTDHDSDWGSKLMTLPESMNLTALSIETTSWSNEF AIPYPTYFHPSSDDEVFQWQNRMQSHNRRYLFAFAGAPRPSANDSIRKEIIHQCLASRRTCNFLRCNSGGESRCDNPAEVIKVFQDSVFCLQPPGDSYTR RSIFDSILAGCIPVFFHPFSAYAQYTWHLQRDYWRYSVFIPIDLVKDGFVSIKQVLLQISDNEMLAMRKEVIKLIPRVIYADPRSKLQTLEDAFDITLKG VLHRIGKVRKNINKGRDPSNGFAEENSWKMKLSGIGVEEEWDHFTDTSMRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13990			Exostosin family protein (.1)		Potri.014G147800 [exp]	0	1
					Potri.002G200150 [exp]	15.87	0.7176
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Potri.003G169000 [exp]	16.30	0.6886
AT1G68130	C2H2ZnF	IDD14beta, IDD1...	indeterminate(ID)-domain 14 (....		Potri.008G140400 [exp]	19.82	0.7092
AT5G62440			Protein of unknown function (D...		Potri.013G021800 [exp]	21.21	0.6732
AT3G52910	GRF	ATGRF4	growth-regulating factor 4 (.1...		Potri.006G115200 [exp]	21.35	0.7074
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Potri.014G074500 [exp]	27.60	0.7044
AT2G41850		ADPG2, PGAZAT	ARABIDOPSIS DEHISCENCE ZONE PO...		Potri.016G054800 [exp]	34.29	0.6717	PG.2
AT4G34440		AtPERK5	proline-rich extensin-like rec...		Potri.009G115200 [exp]	35.88	0.6160
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.017G038100 [exp]	42.35	0.6714
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Potri.002G239100 [exp]	45.82	0.6678

Compare expression of checked genes

Potri.014G147800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.