Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26570 1510 / 0 ATGWD3, OK1, PWD PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) AT1G10760 157 / 2e-38 GWD1, GWD, SOP1, SOP, SEX1 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) AT4G24450 152 / 4e-37 PWD, GWD3, ATGWD2 "phosphoglucan, water dikinase", phosphoglucan, water dikinase (.1) AT5G01260 55 / 1e-07 Carbohydrate-binding-like fold (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G234500 [exp] 1974 / 0 AT5G26570 1561 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.010G044100 [exp] 173 / 1e-43 AT1G10760 1875 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Potri.008G188150 [exp] 164 / 1e-40 AT1G10760 1781 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Potri.006G099200 [exp] 51 / 5e-06 AT5G01260 156 / 8e-44 Carbohydrate-binding-like fold (.1.2) Potri.009G044800 [exp] 46 / 0.0001 AT5G01260 149 / 8e-42 Carbohydrate-binding-like fold (.1.2) Potri.016G114500 [exp] 45 / 0.0002 AT5G01260 169 / 1e-48 Carbohydrate-binding-like fold (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037434 [exp] 1585 / 0 AT5G26570 1508 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Lus10041275 [exp] 1509 / 0 AT5G26570 1353 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Lus10029118 [exp] 171 / 9e-43 AT1G10760 1889 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Lus10013044 [exp] 169 / 2e-42 AT1G10760 1910 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Lus10032829 [exp] 165 / 6e-41 AT4G24450 1571 / 0.0 "phosphoglucan, water dikinase", phosphoglucan, water dikinase (.1) Lus10035528 [exp] 50 / 1e-05 AT2G40070 280 / 4e-83 unknown protein Lus10002495 [exp] 49 / 2e-05 AT5G01260 152 / 3e-42 Carbohydrate-binding-like fold (.1.2) Lus10004826 [exp] 49 / 3e-05 AT5G01260 160 / 1e-44 Carbohydrate-binding-like fold (.1.2) Lus10027767 [exp] 49 / 3e-05 AT2G40070 288 / 5e-86 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [poplar] [flax] GHD PF00686 [poplar] [flax] CBM_20 Starch binding domain CL0179 [poplar] [flax] ATP-grasp PF01326 [poplar] [flax] PPDK_N Pyruvate phosphate dikinase, AMP/ATP-binding domain
Representative CDS sequence Show only first row Show all	>Potri.014G147900.1 pacid=42763209 polypeptide=Potri.014G147900.1.p locus=Potri.014G147900 ID=Potri.014G147900.1.v4.1 annot-version=v4.1 ATGGATTCTCTGCGTCTATTGCATTTTGTCACTCCTACTCCAACTAGAAGAAACCAATTCCATCACTCTCATTCTCATCATAAACTTGCACGACCACCGG GACTGTGCGCGACCACCACGTTCTTCAATCCAAGGATTTCGATTCCGATTCGCGGAAGAATCGTTTGTGCTGTTTCCTCTACTCAAACCAGAGAAGAAGA GAGGGCAACGAAGAAGAGCATGTTGAATGTGAGGATAGATCACCAAGTTGAATTTGGTGAGAATATTGTGATTGTGGGGTCAAGTAAAGAAATGGGCTCT TGGAAGAAGAAGGTTCCGATGAAATGGACGGAGAATGGATGGGTTTGTAAGTTGGAGCTGAAAGGGGGTGAGGTTGTTGAGTTTAAGTTTGCTATTGCGA GCAAGGACAATAGTTTGGTGTGGGAAAGTGGGGATAACCGGGCTTTGAAGCTTCCCAGAGAAGGGAGTTTTGCGATTGTTTGTCGATGGGGTGCGACTGG GGAGGCTATCAATTTTTCGCCTTTGGAGCTAGAGCAGAATGGAGAGGAAGCGGAGGACGTTGGCGAGAATGGTTCTGCTGGTGCTGATATCACTTTGGAG GCGGGAACAAGTCCTTTTGTTGGGCAGTGGCAAGGGAAGGCTGCCTCTTTCATGCGATCGAATGACCATGGGAACAGGGGAAGTGAAAGAAGATGGGACA CGTCTGGTCTTCAGGGCTCGGTTTTAAAGTTAGTTGAAGGTGACTTGAATGCAAGGAATTGGCGGAGAAAGCTTGAAGTTGTGTGTGAGCTACTAGTTGG AAGTCTTCAGAGTAAGGACCGGTTGGAGGCTCTAATATACTCTGCTATCTATTTGAAGTGGATAAACACAGGGCAAGTTCCTTGCTTTGAAGATGGAGGT CATCACCGGCCAAATCGGCATGCTGAAATTTCCAGGCTTATATTCCAGGAATTAGAACAGGTGTCTTCAAGGAGAGATACTTCAGCCCAGGAAGTGCTTG TTATTCGAAAAATCCATCCCTGTTTGCCATCATTCAAGGCAGAATTCACAGCATCTGTTCCTCTTACTCGGATTAGAGATATTGCTCATCGGGGCGACAT TCCTCATGACCTTAAGCAAGAAATCAAACATACAATACAAAACAAACTTCATCGCAATGCTGGCCCTGAAGATTTAGTTGCTACTGAAGCAATGCTCGCA AGAATTACGAAGAACCCTGGGGAATATAGTGAAGCATTTGTTGAACAATTCAAAATATTCCATCATGAACTCAAAGATTTCTTCAATGCAGGAAGTCTTG CTGAACAACTTGTATCAATTAGAGAATCCTTGGATGAAAGGGGCTGTTCGGCTCTTACATTATTTATGGATTGCAAAAAGAATTTGGATTCTGCAGAAAA ATCACGCACTATTTTTGAACTGATCAAAACTATGCAATCCCTGAATGCTCTGAGAGATATAATTGTAAAAGGTCTTGAAAGTGGTATCGGGAATGATGCT TCTGATGCTGCAATAGCTATGCGTCAAAAGTGGCGTCTATGTGAGATTGGTCTTGAAGACTATTCTTTTGTTCTTCTGAGCAGGTTTCTCAATGCACTTG AAGCTATGGGAGGGGCTAAATGGCTTGCAGACAATGTGGAGTCAAAGAATATAAGCTCTTGGAGTGACCCACTTGGTGCGCTGATTGTTGGTGTTCATCA ACTTGCTTTATCTGGTTGGAAACCAGAAGAATGTGAAGCTATTGGAGCCGAGCTTCTTGCCTGGAAAGAGAAAGGTCTCCTTGAAAAGGAAGGAAGTGAA GATGGGAAGATAATTTGGGTACTAAGGCTTAAAGCTACTCTTGATAGAGCAAGAAGGCTCACCGAGGAATATTCTGAAGCTCTTCTTCAAACATTTCCAG AAAGAGTGCAGATGCTTGGAAAAGCACTTGGAATTCCTGAAAACAGTATAAGGACGTATACTGAAGCTGAGATTCGTGCTGGGGTAATTTTTCAGGTTTC AAAACTTTGTACCCTGCTTTTGAAAGCGGTTAGAAGTACCCTTGGTTCCCATGGTTGGGATATTCTTGTTCCTGGAGCTGCTAGTGGCACATTAGTACAG GTTGAGAGCATTGTGCCTGGATCATTGCCATCGACAATAGAAGGACCTATTGTTCTTGTGGTGAACAAAGCTGATGGAGATGAAGAGGTAACAGCTGCTG GCAGTAACATAGTGGGAATTATACTTCTGCAAGAGCTGCCTCACTTATCTCATCTTGGTGTTAGGGCTCGTCAAGAGAGGGTTGTCTTTGTGACATGCGA AGATGATGATAAAGTTGCTGATATGCGAAAGCTTACTGGGAAAAAAGTGAGGTTGGAAGCTTCCTTGACTGGCGTAAATCTAACTCTCTCTTCATCAGAT GATATCGTTCCAGAAGATCTTTCAGGCAACGGTTCAGCAACAGTTGAACCTCCTGGACCTCATGATCCATTCTTGTCTGCTGTTAAAGCTCACTCCAATA AGGGTGTTTCTGCTGGAGGTCTTATACTACTTGCAGATGCAGATGCACAAACATCAGGCGCAAAGGCTGCTGCTTGTGGTCGTTTAGCTTCTTTGACAGC AGCTTCGAAAAAGGTTTCCAGTGACCAAGGTGTGCTGGCTTCATTTGAAGTTCCTAAGAGCATGGTTATACCTTTTGGTTCTATGGAATTGGCACTAGAG CATAGCAAATCTATGGACACATTCATGTCATTTCTAGAACAGATAGAAACAGCTAGGCTGGATGGGGGCGAACTTGACAAGCTATGCTTTAAACTCCAGG AACTGATCTCTTCCCTGCAGCTCCCAAAAGACACCATTGATGGAATAGGTCGAATGTTTCCAGACAATGCAAGACTGATTGTACGCTCAAGTGCCAATGT TGAGGACTTGGCTGGAATGTCAGCTGCTGGTCTTTATGAATCAATTCCCAATGTTAGCCCATCAAATCCAACTGCATTTGCAAATGCTGTTAGCCAAGTA TGGGCTTCATTGTACACACGGAGAGCAGTTCTAAGCCGTAGAGCTGCTGGCGTGCCTCAGAAAGATGCCACAATGGCAGTTCTGGTGCAAGAAATGCTTT CACCAGATCTATCATTCGTGCTCCACACACTCAGCCCAACTGACCGTGACCAGAACTCTGTTGAAGCAGAGATTGCCCCTGGGCTGGGTGAGACCCTAGC TTCTGGCACCAGAGGCACTCCATGGCGCCTTTCATGCGGGAAGTTTGATGGGCACGTGAGAACACTGGCATTTGCAAATTTCAGCGAGGAGATGCTGGTA TCCGGTGCAGGTCCTGCTGATGGCGACGTAACCCGTTTGACTGTAGACTACAGCAAGAAACCATTAACAGTTGATCCAATATTCCGTCACCAACTGGGTC AGCGTCTCTGTTCTGTAGGCTTTTTCCTCGAAAGGGAGTTTGGCAGCCCACAGGATGTGGAAGGATGTGTGGTTGGAAAAGATATCTATGTCGTTCAGAC ACGCCCACAACCTTAG
AA sequence Show only first row Show all	>Potri.014G147900.1 pacid=42763209 polypeptide=Potri.014G147900.1.p locus=Potri.014G147900 ID=Potri.014G147900.1.v4.1 annot-version=v4.1 MDSLRLLHFVTPTPTRRNQFHHSHSHHKLARPPGLCATTTFFNPRISIPIRGRIVCAVSSTQTREEERATKKSMLNVRIDHQVEFGENIVIVGSSKEMGS WKKKVPMKWTENGWVCKLELKGGEVVEFKFAIASKDNSLVWESGDNRALKLPREGSFAIVCRWGATGEAINFSPLELEQNGEEAEDVGENGSAGADITLE AGTSPFVGQWQGKAASFMRSNDHGNRGSERRWDTSGLQGSVLKLVEGDLNARNWRRKLEVVCELLVGSLQSKDRLEALIYSAIYLKWINTGQVPCFEDGG HHRPNRHAEISRLIFQELEQVSSRRDTSAQEVLVIRKIHPCLPSFKAEFTASVPLTRIRDIAHRGDIPHDLKQEIKHTIQNKLHRNAGPEDLVATEAMLA RITKNPGEYSEAFVEQFKIFHHELKDFFNAGSLAEQLVSIRESLDERGCSALTLFMDCKKNLDSAEKSRTIFELIKTMQSLNALRDIIVKGLESGIGNDA SDAAIAMRQKWRLCEIGLEDYSFVLLSRFLNALEAMGGAKWLADNVESKNISSWSDPLGALIVGVHQLALSGWKPEECEAIGAELLAWKEKGLLEKEGSE DGKIIWVLRLKATLDRARRLTEEYSEALLQTFPERVQMLGKALGIPENSIRTYTEAEIRAGVIFQVSKLCTLLLKAVRSTLGSHGWDILVPGAASGTLVQ VESIVPGSLPSTIEGPIVLVVNKADGDEEVTAAGSNIVGIILLQELPHLSHLGVRARQERVVFVTCEDDDKVADMRKLTGKKVRLEASLTGVNLTLSSSD DIVPEDLSGNGSATVEPPGPHDPFLSAVKAHSNKGVSAGGLILLADADAQTSGAKAAACGRLASLTAASKKVSSDQGVLASFEVPKSMVIPFGSMELALE HSKSMDTFMSFLEQIETARLDGGELDKLCFKLQELISSLQLPKDTIDGIGRMFPDNARLIVRSSANVEDLAGMSAAGLYESIPNVSPSNPTAFANAVSQV WASLYTRRAVLSRRAAGVPQKDATMAVLVQEMLSPDLSFVLHTLSPTDRDQNSVEAEIAPGLGETLASGTRGTPWRLSCGKFDGHVRTLAFANFSEEMLV SGAGPADGDVTRLTVDYSKKPLTVDPIFRHQLGQRLCSVGFFLEREFGSPQDVEGCVVGKDIYVVQTRPQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Potri.014G147900 [exp]	0	1
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Potri.010G044100 [exp]	1.41	0.8837
AT5G42900		COR27	cold regulated gene 27 (.1.2.3...		Potri.009G101400 [exp]	3.00	0.8458
AT3G32940			RNA-binding KH domain-containi...		Potri.001G008700 [exp]	4.58	0.8757
AT4G10070			KH domain-containing protein (...		Potri.013G099800 [exp]	6.00	0.8566
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Potri.009G041800 [exp]	13.26	0.8792
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Potri.005G241700 [exp]	13.96	0.8090
AT2G40840		DPE2	disproportionating enzyme 2 (....		Potri.016G028900 [exp]	14.49	0.8544
AT3G05950			RmlC-like cupins superfamily p...		Potri.013G051700 [exp]	16.61	0.7812
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Potri.002G064400 [exp]	22.27	0.7964	Pt-GI.2
AT1G14205			Ribosomal L18p/L5e family prot...		Potri.008G087100 [exp]	22.80	0.8168

Compare expression of checked genes

Potri.014G147900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.