Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PDS.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14210 940 / 0 PDE226, PDS3 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) AT3G04870 235 / 6e-70 SPC1, PDE181, ZDS SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) AT1G62830 47 / 3e-05 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G235200 [exp] 1039 / 0 AT4G14210 899 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Potri.005G050700 [exp] 249 / 5e-75 AT3G04870 926 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Potri.013G037700 [exp] 247 / 5e-74 AT3G04870 953 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Potri.004G177400 [exp] 73 / 2e-13 AT4G14210 79 / 2e-15 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Potri.001G344800 [exp] 51 / 2e-06 AT3G09580 540 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.008G170300 [exp] 46 / 7e-05 AT3G23510 1408 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067900 [exp] 45 / 0.0001 AT3G23530 1392 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.015G074600 [exp] 45 / 0.0002 AT5G13700 395 / 5e-134 polyamine oxidase 1 (.1) Potri.017G144001 [exp] 44 / 0.0002 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041260 [exp] 946 / 0 AT4G14210 951 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Lus10021967 [exp] 946 / 0 AT4G14210 952 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Lus10015935 [exp] 249 / 9e-75 AT3G04870 954 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Lus10009190 [exp] 223 / 2e-65 AT3G04870 854 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Lus10024003 [exp] 61 / 2e-09 AT4G14210 64 / 1e-10 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Lus10012283 [exp] 44 / 0.0005 AT1G62830 984 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10015996 [exp] 43 / 0.0007 AT1G62830 988 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13450 [poplar] [flax] NAD_binding_8 NAD(P)-binding Rossmann-like domain
Representative CDS sequence Show only first row Show all	>Potri.014G148700.5 pacid=42762805 polypeptide=Potri.014G148700.5.p locus=Potri.014G148700 ID=Potri.014G148700.5.v4.1 annot-version=v4.1 ATGAGTGCATTGAACTTGAGCTGGCATAGTAAATCATTAGACTCTCAAGTTGCCTTGAGATGTGGCGCTTATCCTACTTGTTCTCACCAAACTAATGCAC TAGCTTTTAGAGGCAGTGAATCAATGGGCCATTCTTTGAAATTCCCATTTGGAAATTCTTCTGCTAAAACAAGACTAAGGAATCATATCCGCCCTCCTTT GCGGGTTGTCTGTGTGGACTATCCAAGACCGGACCTTGATAACACGGTGAATTTCTTAGAAGCTGCCTTGTTATCTTCATCCTTTCGTTCTTCTCCGCGT CCAGCTAAACCATTAAATGTTGTCATTGCTGGTGCAGGTTTGGCGGGTTTATCGACTGCAAAATATTTGGCAGATGCAGGCCATAAGCCTATATTGCTTG AAGCAAGAGATGTTTTAGGTGGAAAGGTGGCTGCATGGAAAGATGACGATGGAGACTGGTACGAGACAGGCTTGCATATATTCTTTGGGGCATATCCAAA TGTGCAGAATCTTTTTGGTGAACTTGGTATCAATGATAGGTTGCAATGGAAGGAGCATTCTATGATATTTGCAATGCCAAATAAGCCAGGAGAATTCAGT CGATTTGATTTTCCTGAAGTTCTCCCTGCACCATTAAATGGGATATTGGCCATTTTAAAGAACAATGAAATGCTGACTTGGCCAGAGAAAGTGAAGTTTG CAATTGGGCTACTGCCAGCAATTGTTGGTGGACAAGCTTATGTTGAGGCTCAAGATGGTTTAAGTGTTCAAGAGTGGATGAGAAAGCAGGGTGTACCTGA TAGAGTGACTACTGAGGTGTTTATTGCCATGTCAAAGGCTCTAAACTTTATTAACCCAGATGAGCTTTCAATGCAATGCATTTTGATAGCTTTGAACAGA TTTCTTCAGGAGAAACATGGTTCAAAGATGGCTTTCTTGGATGGTAATCCCCCAGAGAGGCTCTGCATGCCAATTGTTGATCATATTCAGTTGCGTGGTG GTGAAGTCAAGCTTAATTCTCGGATAAAGAAAATTGAGCTAAATGATGATGGAACAGTGAAGAGTTTTTTACTAAATACTGGGGATGTGATTGAAGGGGA TGTTTATGTGTTTGCCACTCCAGTTGATACCCTGAAGCTTCTTTTGCCTGATAACTGGAAAGAGATTCCTTACTTCAAGAAACTGGAGAAATTAGTTGGA GTTCCTGTTATTAATGTTCACATATGGTTTGACAGGAAACTGAAGAATACATACGATCACCTACTTTTCAGCAGGAGTCCTCTTCTCAGTGTGTATGCTG ACATGTCTCTGACATGTAAGGAGTATTATGACCCAAATAAATCTATGCTGGAGTTAGTTTTTGCGCCTGCTGAAGAATGGATTTCACGCAGTGACTCAGA GATTATTGATGCTACAATGGGGGAACTTGCAAAACTTTTTCCTGATGAAATATCCGCAGATCAAAGCAAAGCAAAAATCGTGAAGTATCATGTTGTTAAA ACTCCAAGGTCAGTTTACAAGACTGTCCCAGATTGTGAACCTTGCCGTCCCTTGCAAAGATCTCCGATAGAGGGTTTCTATTTAGCTGGTGACTACACAA AACAAAAGTACTTGGCTTCAATGGAAGGTGCTGTTCTATCAGGGAAGCTTTGTGCACAGGCAATTGTACAGGATTATGAGCTCCTGGTTGCTCGGGGGCA AGGAAGGTTGACTGAGGCAACCATTACTTAA
AA sequence Show only first row Show all	>Potri.014G148700.5 pacid=42762805 polypeptide=Potri.014G148700.5.p locus=Potri.014G148700 ID=Potri.014G148700.5.v4.1 annot-version=v4.1 MSALNLSWHSKSLDSQVALRCGAYPTCSHQTNALAFRGSESMGHSLKFPFGNSSAKTRLRNHIRPPLRVVCVDYPRPDLDNTVNFLEAALLSSSFRSSPR PAKPLNVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFS RFDFPEVLPAPLNGILAILKNNEMLTWPEKVKFAIGLLPAIVGGQAYVEAQDGLSVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNR FLQEKHGSKMAFLDGNPPERLCMPIVDHIQLRGGEVKLNSRIKKIELNDDGTVKSFLLNTGDVIEGDVYVFATPVDTLKLLLPDNWKEIPYFKKLEKLVG VPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSLTCKEYYDPNKSMLELVFAPAEEWISRSDSEIIDATMGELAKLFPDEISADQSKAKIVKYHVVK TPRSVYKTVPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYELLVARGQGRLTEATIT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Potri.014G148700 [exp]	0	1	Pt-PDS.1
AT3G48000		ALDH2A, ALDH2B4	aldehyde dehydrogenase 2A, ald...		Potri.015G074100 [exp]	5.09	0.9429	Pt-ALDH1.3
AT2G27680			NAD(P)-linked oxidoreductase s...		Potri.009G146000 [exp]	7.81	0.9511
AT4G36910		CBSX1, CDCP2, L...	LOSS OF THE TIMING OF ET AND J...		Potri.007G046400 [exp]	14.38	0.9428
AT1G30650	WRKY	ATWRKY14, AR411...	WRKY DNA-binding protein 14 (....		Potri.011G157100 [exp]	15.23	0.8999	WRKY14.3
AT5G49580			Chaperone DnaJ-domain superfam...		Potri.010G148900 [exp]	18.33	0.9093
AT2G39000			Acyl-CoA N-acyltransferases (N...		Potri.010G222900 [exp]	24.49	0.9317
AT2G18710		SCY1	SECY homolog 1 (.1)		Potri.006G175300 [exp]	27.71	0.9394
AT4G17040		HON5, CLPR4	happy on norflurazon 5, CLP pr...		Potri.003G083300 [exp]	28.91	0.9418
AT1G10830		Z-ISO1.2, Z-ISO...	15-cis-zeta-carotene isomerase...		Potri.014G146900 [exp]	29.39	0.9381
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000500 [exp]	32.12	0.9412

Compare expression of checked genes

Potri.014G148700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.