Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32000 1392 / 0 DNA topoisomerase, type IA, core (.1.2) AT5G63920 394 / 4e-123 TOP3A, AtTOP3alpha topoisomerase 3alpha (.1) AT4G31210 59 / 1e-08 DNA topoisomerase, type IA, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G067100 [exp] 405 / 1e-127 AT5G63920 1389 / 0.0 topoisomerase 3alpha (.1) Potri.006G279700 [exp] 66 / 1e-10 AT4G31210 1234 / 0.0 DNA topoisomerase, type IA, core (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035035 [exp] 1452 / 0 AT2G32000 1363 / 0.0 DNA topoisomerase, type IA, core (.1.2) Lus10021692 [exp] 1141 / 0 AT2G32000 1071 / 0.0 DNA topoisomerase, type IA, core (.1.2) Lus10004959 [exp] 313 / 2e-93 AT5G63920 1136 / 0.0 topoisomerase 3alpha (.1) Lus10020186 [exp] 52 / 3e-06 AT4G31210 1196 / 0.0 DNA topoisomerase, type IA, core (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01131 [poplar] [flax] Topoisom_bac DNA topoisomerase CL0413 [poplar] [flax] Toprim-like PF01751 [poplar] [flax] Toprim Toprim domain
Representative CDS sequence Show only first row Show all	>Potri.014G148800.1 pacid=42763073 polypeptide=Potri.014G148800.1.p locus=Potri.014G148800 ID=Potri.014G148800.1.v4.1 annot-version=v4.1 ATGGCCCCTCCCAAAGTGCTCATGATTGCAGAGAAACCTAGCATCGCTCTATCCATTGCTTCTACAATCTCCGGCGGCCAAATGCATAGTAGGAAAGGCA CTACCGAGGTTCATGAATTTGAAGGAATGTTTAATGGATTTCGTGCATACTTTAAAGTCACTTCAGTCATTGGACATGTTTTCAGTGTAGATTTTCCAGC AAAATATCAAGACTGGGCCGCCACTGATCCTGCTGATCTTTTTCAAGCTCCAATTCATAAGGCAGAAGCAAATCCAAAGGCTCATATTTGTAGGCATTTA AGTCAAGAAGCTCGTGGTTGCAATCATTTGGTATTGTGGTTGGACTGTGATCGTGAAGGAGAAAATATATGCTTTGAAGTTATTCAGTGTACCGGTTTTC AAGCAAATGATGATAGAAGAAAGGTTTATCGCGCACGATTTTCTTCAGTTACTGAGAAAGACATTTTGAAGGCCATGAACTGCCTAGTTGAACCCAACGA ATATGAGGCACTAGCTGTGGATGCTCGGCAAGAGATAGATTTGAAAGTTGGTGTTGCATTCACACGATTTCAAACTAGTTTTTTCCAGGGAAAATATGGC AATCTTGATTCCAGAGTTATCTCATATGGGCCGTGTCAAACTCCTACCCTTGGGTTTTGTGTACAGAGGTATTTGCAAATTACTACTTTTAAGCCAGAAA AGTTTTGGGCTTTGCGCCCCCACGTAATGGTAGATGGCTATGAACTTCAACTAGAATGGGAACGTCACAAGTTATTTGACTTGGATGTTGCTTTGATGTT TCAAAAGCTGGTATTACAGGATAGAATATTGGAAGTAACTGATATGTCAGAGAAACAGGAAAGCAAAGGCCGTCCTCCTGGTCTAAACACAGTGAACCTT CTAAAGATTGCTTCAAGTGCATTAGGCTTCGGACCTCAAGTGACCATGCAGCTGGCTGAACGTCTATATATTCAGGGATTTATCAGTTATCCACGCACAG AGAGCACTGCCTACCCTTCCTCATTTGATTTTAAAGGCACACTTGGTGCACTAGCAAACAATCCAATGTGGGGCGATTATGTCCAGGGACTGCTTTCTGG TGGTTATCATAAGCCTCAGTCTGGAAAAGATGCAGGTGACCATCCTCCTATAACTCCAATGCGGTCAGCAAATGAGGATATGCTTGGAAGAGATGCTTGG AGACTATATCAGTATGTCTGCCAACATTTTCTGGGGACTGTATCTCCAGACTGCAAGTATACAAGGACAAAGGTAGAATTCTCAATTGGTGGAGAGTTCT TCCATTGTATAGGTCTGCATGTTACAGTCAAAGGATTTACATCAATTATGCCATGGTTGGCAGTGAGTGAGAAAAATCTTCCTCAGTTTGCAAAAGGAGA TAAAATTGAAGTTTCTAAAGTTGAGCTATTTGAGGGGCAAACTGTTCCTCCAGATTATCTCAGTGAAAGTGAGCTGATTTCTCTGATGGAGAAGAATGGA ATAGGTACAGATGCATCAATATCTGTACATATTAACAACATCTGTGAGCGCAACTATGTTCAGGTACAAGCTGGTAGAAAGTTGGTTCCAACTGCTTTGG GTATCACACTAATAAGAGGCTATCAATGTATTGATCCAGATCTCTGTTTACCAGATATTCGTGGTTTTATTGAGCAGCAGATTACCCTTGTTGCCAAGGG TGAGGCTGATCATTCTTGTGTTGTTCAGCATGTGCTAGAACAATTCAAGCGGAAGTACAGTTACTTTGTTAAGCAGATTGACAACATGGATGCATTGTTT GAAGCACAGTTCTCCCCACTTGCTGACTCAGGACGTGCTTTTAGCAAATGTGGTAAATGCCTGAGGTACATGAAGTACATTTCTAGCCAGCCATCGCGTT TATATTGTGGTACATGCGAGGAAGTTTATTATCTTCCTCAAAAGGGAACAATCAAGCTGTACAAGGAACTAACATGTCCTTTGGACAACTTTGAGCTGTT GATCTTTGCCATGGCTGGTCCAGAAGGCAAGTCATTCCCTCTTTGTCCTCTCTGCTACAATAGTCCTCCTTTTGAAGGTATAGACGCTCTCTTTGGTGCT TCTAAGACCGGTAGTTCTGGGATGTTGGGGAAGGGGGCCGGCATGCCATGCTTCCTCTGTCCGCATCCGACATGTCGACATTCTTTGATAGCTCAAGGGG TTTGTGCTTGCCCCGAATGCAATGGGACACTTGTTTTGGATCCTATAAGTGCTCCCAAGTGGAGACTTTACTGCAATATGTGCAATTGTCTTGTCTTGCT CCCTCAAGGTGCTCACCGGATTTCCACTACTCGAGAACAATGTCCTGAATGTGACTCAACAATCATAGAAGTGGATTTCAACAAGAATACAACGCCCTTG GAGGATGGAGCAACCCTGCATGTTGGTTGTATTCTTTGTGATAATCTGCTTCATTCTCTCGTCGAGGTGAAGCATGGAAAGTCGTTCTTCAAGCGAGCTG GTAAGTGGGCAAGGGCAAGGGGAAGAGGTGCTTATAGAGGAAGGGGACGGGGTCTTGGGAAAATGGACCCTAAGATGAGCTTTCGGGATTTCTAA
AA sequence Show only first row Show all	>Potri.014G148800.1 pacid=42763073 polypeptide=Potri.014G148800.1.p locus=Potri.014G148800 ID=Potri.014G148800.1.v4.1 annot-version=v4.1 MAPPKVLMIAEKPSIALSIASTISGGQMHSRKGTTEVHEFEGMFNGFRAYFKVTSVIGHVFSVDFPAKYQDWAATDPADLFQAPIHKAEANPKAHICRHL SQEARGCNHLVLWLDCDREGENICFEVIQCTGFQANDDRRKVYRARFSSVTEKDILKAMNCLVEPNEYEALAVDARQEIDLKVGVAFTRFQTSFFQGKYG NLDSRVISYGPCQTPTLGFCVQRYLQITTFKPEKFWALRPHVMVDGYELQLEWERHKLFDLDVALMFQKLVLQDRILEVTDMSEKQESKGRPPGLNTVNL LKIASSALGFGPQVTMQLAERLYIQGFISYPRTESTAYPSSFDFKGTLGALANNPMWGDYVQGLLSGGYHKPQSGKDAGDHPPITPMRSANEDMLGRDAW RLYQYVCQHFLGTVSPDCKYTRTKVEFSIGGEFFHCIGLHVTVKGFTSIMPWLAVSEKNLPQFAKGDKIEVSKVELFEGQTVPPDYLSESELISLMEKNG IGTDASISVHINNICERNYVQVQAGRKLVPTALGITLIRGYQCIDPDLCLPDIRGFIEQQITLVAKGEADHSCVVQHVLEQFKRKYSYFVKQIDNMDALF EAQFSPLADSGRAFSKCGKCLRYMKYISSQPSRLYCGTCEEVYYLPQKGTIKLYKELTCPLDNFELLIFAMAGPEGKSFPLCPLCYNSPPFEGIDALFGA SKTGSSGMLGKGAGMPCFLCPHPTCRHSLIAQGVCACPECNGTLVLDPISAPKWRLYCNMCNCLVLLPQGAHRISTTREQCPECDSTIIEVDFNKNTTPL EDGATLHVGCILCDNLLHSLVEVKHGKSFFKRAGKWARARGRGAYRGRGRGLGKMDPKMSFRDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32000			DNA topoisomerase, type IA, co...		Potri.014G148800 [exp]	0	1
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Potri.012G037100 [exp]	1.00	0.7693
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Potri.018G048700 [exp]	8.94	0.7539
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Potri.009G049200 [exp]	23.66	0.7420
AT3G47570			Leucine-rich repeat protein ki...		Potri.016G114400 [exp]	24.81	0.7296
AT5G36930			Disease resistance protein (TI...		Potri.005G206400 [exp]	26.26	0.7019
AT1G29820			Magnesium transporter CorA-lik...		Potri.001G353000 [exp]	26.75	0.7504
AT1G17110		UBP15	ubiquitin-specific protease 15...		Potri.011G095200 [exp]	30.39	0.7182	Pt-UBP15.2
AT5G22850			Eukaryotic aspartyl protease f...		Potri.001G213600 [exp]	30.74	0.6897
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Potri.013G081300 [exp]	33.94	0.6752
AT4G04920		AtSFR6, SFR6	sensitive to freezing 6 (.1.2)		Potri.004G040300 [exp]	39.15	0.7375

Compare expression of checked genes

Potri.014G148800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.