Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31980 90 / 9e-24 AtCYS2 PHYTOCYSTATIN 2 (.1) AT5G47550 50 / 1e-08 Cystatin/monellin superfamily protein (.1) AT3G12490 49 / 2e-07 ATCYS6, ATCYSB ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) AT2G40880 42 / 2e-05 ATCYSA, FL3-27 cystatin A (.1) AT4G16500 40 / 5e-05 Cystatin/monellin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G235800 [exp] 147 / 1e-46 AT2G31980 96 / 5e-26 PHYTOCYSTATIN 2 (.1) Potri.001G225800 [exp] 42 / 7e-06 AT3G12490 142 / 4e-44 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Potri.009G022300 [exp] 39 / 0.0002 AT3G12490 134 / 4e-41 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Potri.016G030900 [exp] 39 / 0.0004 AT3G12490 244 / 5e-82 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Potri.006G033201 [exp] 38 / 0.0006 AT3G12490 251 / 8e-86 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041257 [exp] 82 / 8e-21 AT2G31980 72 / 9e-17 PHYTOCYSTATIN 2 (.1) Lus10026117 [exp] 39 / 0.0005 AT3G12490 261 / 2e-88 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Lus10008702 [exp] 39 / 0.0008 AT3G12490 241 / 9e-81 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0121 [poplar] [flax] Cystatin PF16845 [poplar] [flax] SQAPI Aspartic acid proteinase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.014G149300.1 pacid=42762856 polypeptide=Potri.014G149300.1.p locus=Potri.014G149300 ID=Potri.014G149300.1.v4.1 annot-version=v4.1 ATGGCAAAACTTATGAAGTCTTCAGTTCCCTTCTTGGTGTGTTTTCTTGTTCTCTCCACGCTTCTTGTGTCGGGAGTGAGTGGTTATAGAGGAGGAATGG TGGGGGGGAGATCCGAGGTGAGTGACGTGAAGACTAACAAGCAGGTACAGGAGCTGGGGAGGTTCTCCGTGAAGGAGTTCAACAGCCACAGAAGCCTGTA CTGGAAGGGTGGTGGAGTTGGAAAACTGATGTTTTCTGAGGTGGTGGAGGCACACAAGCAGGTGGTTTCTGGGCTCAAGTATTATTTAAATATTGTGGCC ACCACACAGAATGGAGAGAAGAGAATGTTTGATTCGGTAGTTGTGGTCCAGCCTGGGCTTCGAACCACGGAGTTGCTTACCTTTGAGCCTTCAGCTAAAT TGATGGTTAGAAAATGA
AA sequence Show only first row Show all	>Potri.014G149300.1 pacid=42762856 polypeptide=Potri.014G149300.1.p locus=Potri.014G149300 ID=Potri.014G149300.1.v4.1 annot-version=v4.1 MAKLMKSSVPFLVCFLVLSTLLVSGVSGYRGGMVGGRSEVSDVKTNKQVQELGRFSVKEFNSHRSLYWKGGGVGKLMFSEVVEAHKQVVSGLKYYLNIVA TTQNGEKRMFDSVVVVQPGLRTTELLTFEPSAKLMVRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31980		AtCYS2	PHYTOCYSTATIN 2 (.1)		Potri.014G149300 [exp]	0	1
AT3G02060			DEAD/DEAH box helicase, putati...		Potri.002G237400 [exp]	27.33	0.8926
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Potri.014G149800 [exp]	80.49	0.8358
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Potri.014G045600 [exp]	165.69	0.8541

Compare expression of checked genes

Potri.014G149300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.