Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14190 411 / 1e-139 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G42630 100 / 8e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48730 86 / 2e-17 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G35130 86 / 2e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G53700 84 / 1e-16 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53170 82 / 2e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74850 82 / 4e-16 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT5G02860 81 / 6e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39620 78 / 5e-15 ATPPR5, EMB2453 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G79490 77 / 1e-14 EMB2217 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G069100 [exp] 89 / 3e-18 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.009G092100 [exp] 86 / 2e-17 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G058300 [exp] 83 / 7e-17 AT3G53170 618 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G243600 [exp] 83 / 9e-17 AT5G48730 691 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G123600 [exp] 82 / 2e-16 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G082400 [exp] 80 / 7e-16 AT4G39620 625 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G153900 [exp] 79 / 1e-15 AT3G06430 717 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G297300 [exp] 79 / 3e-15 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 76 / 2e-14 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013894 [exp] 103 / 3e-23 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 100 / 7e-22 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033127 [exp] 87 / 1e-17 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10036651 [exp] 84 / 7e-17 AT1G74850 502 / 4e-170 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10012328 [exp] 84 / 1e-16 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 83 / 2e-16 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008650 [exp] 82 / 5e-16 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10023863 [exp] 78 / 5e-15 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10027552 [exp] 77 / 7e-15 AT3G06430 501 / 1e-175 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026884 [exp] 78 / 8e-15 AT4G31850 746 / 0.0 proton gradient regulation 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.014G149500.2 pacid=42762675 polypeptide=Potri.014G149500.2.p locus=Potri.014G149500 ID=Potri.014G149500.2.v4.1 annot-version=v4.1 ATGGCACTCAAGTTCCAAAACAATTCAATACCACCTTGGACATGGAAATTCAACAACTACAAAACCCTAGTAACTACCCATTCTCTATCTCTCGCTTTTC GCCACCCAACAGCCCATGCCACCATCTGCCATGGCCAGGACCACTCTACAAAACACACAACTCTTCTTGTTGACAGCTTCCATGAACACAAGAGGCTCAA GTCCCTGCTTCACAACCTTAACAGCAACCAAAACCCTTTGCAACTGCTTCAACAGGATGGAGACTGGTCCAAAGATGACTTCTGGTCTGTCATCAAATTC CTTAAACTTTCTGCAAGATCCAATCAGATTCTTCAGGTGTTTCATATGTGGAGGGACGTGGAGAAAACAAGAATTAATGAATTCAATTATGAGAAGATTA TAGGGCTGTTAGGTGAAGAGGGTCTAATGGAAGATGCAGTTACTGCGTTTATGGAAATGAAAAGTTTTGGTCTCTGCCTGTCCTTGGAGGTTTACAATTC TATAATTCATGGTTATGCAAGAAATGGCAAGTTTGATGATGCTTTGTTTTACCTTAATCAGATGAATGAAATGAATTTGAGCCCGGAAAGTGATACTTAT GATGGCTTGATTGAAGCTTATGGAACGTATAGAATGTATGATGAGATGGCTATGTGCCTGAAGAAGATGGAGCTGGATGGGTGTTCACCTGATCGCTATA CTTATAATTTGCTTATCCAAAAGTTTGCGCAAGGTGGATTGCTGACAAGAATGGAAAGGGTTTATCAGTCTATGCGAACCAAAAGGATGAAGTTGCAGTC TTCGACTTTGATTTCGATGCTTGAGGCATATGCAAACTTCGGGATTGTGGAGAAGATGGAAAAGATTTTAAGGTGGGCATGGAACTCAAAAATCACTGTA AAGGAGGATTTGGTTAGGAAATTAGCTGGGGTTTATATTGCAAACTACATGTTTTCGAGACTGCACGACTTGGCTGTTGATCTTACTTCTATAACTGGCC GGACTGATATTGTCTGGTGCCTACACCTCCTTTCTCATGCTTGTCTTTTGAGTCGAAGAGGCATGGATGCTGTTGTTAGGGAGATGGAAGATGCAAAGGC TTGTTGGAATATAACAGTTGCAAACATTATCTTGCTAGCATATTTGAAGATGAAAGATTTCACCCGCTTGAGGATCTTGCTCTCTAAGTTACCAGAAATT CGTGTGGAACCTGATATAGTCACTTTTGGAATTCTTTTTGATGCAGAAGAAATAGGTTTTGATGGAAAAGAGTGTTTAGAGATGTGGAGAAAGATGGGTC TTCTTTATAGACGTGTAGAAATGAACACCGATCCTCTGGCTCTCTCTGCTTTCGGTAAGGGAAGCTTCCTCAGAAGCTGTGAAGAGGGCTACTCTTCCCT TGAACCTAATGCTAGAGAAAAGAAAAGGTGGACATATGTCGATTTCATAAATTTAGTGACTAGCAAAGCTCAGTGA
AA sequence Show only first row Show all	>Potri.014G149500.2 pacid=42762675 polypeptide=Potri.014G149500.2.p locus=Potri.014G149500 ID=Potri.014G149500.2.v4.1 annot-version=v4.1 MALKFQNNSIPPWTWKFNNYKTLVTTHSLSLAFRHPTAHATICHGQDHSTKHTTLLVDSFHEHKRLKSLLHNLNSNQNPLQLLQQDGDWSKDDFWSVIKF LKLSARSNQILQVFHMWRDVEKTRINEFNYEKIIGLLGEEGLMEDAVTAFMEMKSFGLCLSLEVYNSIIHGYARNGKFDDALFYLNQMNEMNLSPESDTY DGLIEAYGTYRMYDEMAMCLKKMELDGCSPDRYTYNLLIQKFAQGGLLTRMERVYQSMRTKRMKLQSSTLISMLEAYANFGIVEKMEKILRWAWNSKITV KEDLVRKLAGVYIANYMFSRLHDLAVDLTSITGRTDIVWCLHLLSHACLLSRRGMDAVVREMEDAKACWNITVANIILLAYLKMKDFTRLRILLSKLPEI RVEPDIVTFGILFDAEEIGFDGKECLEMWRKMGLLYRRVEMNTDPLALSAFGKGSFLRSCEEGYSSLEPNAREKKRWTYVDFINLVTSKAQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14190			Pentatricopeptide repeat (PPR)...		Potri.014G149500 [exp]	0	1
AT2G34040			Apoptosis inhibitory protein 5...		Potri.004G052300 [exp]	7.61	0.8463
AT3G61670			Protein of unknown function (D...		Potri.001G093900 [exp]	12.40	0.8811
AT1G08530			unknown protein		Potri.013G052700 [exp]	20.29	0.8802
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Potri.006G248100 [exp]	36.08	0.8399	LUG.1
AT1G11050			Protein kinase superfamily pro...		Potri.017G132250 [exp]	40.00	0.8099
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Potri.009G073500 [exp]	46.95	0.8168
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Potri.003G192100 [exp]	54.29	0.8194
AT4G17540			unknown protein		Potri.003G082200 [exp]	60.74	0.8509
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Potri.006G203700 [exp]	83.07	0.8356
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.002G144700 [exp]	83.28	0.8331

Compare expression of checked genes

Potri.014G149500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.