Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31660 1542 / 0 EMA1, URM9, SAD2 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) AT3G59020 1486 / 0 ARM repeat superfamily protein (.1.2) AT1G26170 85 / 2e-16 ARM repeat superfamily protein (.1) AT3G17340 71 / 3e-12 ARM repeat superfamily protein (.1.2) AT2G46520 58 / 4e-08 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) AT3G08960 54 / 9e-07 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G232600 [exp] 1840 / 0 AT2G31660 1499 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Potri.010G152700 [exp] 84 / 3e-16 AT3G17340 1051 / 0.0 ARM repeat superfamily protein (.1.2) Potri.008G109300 [exp] 74 / 6e-13 AT1G26170 1339 / 0.0 ARM repeat superfamily protein (.1) Potri.T108626 [exp] 73 / 1e-12 AT1G26170 1345 / 0.0 ARM repeat superfamily protein (.1) Potri.014G100000 [exp] 66 / 1e-10 AT2G46520 1464 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Potri.002G172700 [exp] 66 / 1e-10 AT2G46520 1421 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Potri.016G119900 [exp] 63 / 1e-09 AT3G08960 1547 / 0.0 ARM repeat superfamily protein (.1) Potri.008G085800 [exp] 46 / 0.0002 AT4G27640 1605 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025509 [exp] 1646 / 0 AT2G31660 1591 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Lus10026726 [exp] 1150 / 0 AT2G31660 1084 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Lus10026727 [exp] 469 / 2e-157 AT2G31660 480 / 6e-162 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Lus10030241 [exp] 67 / 5e-11 AT2G46520 1438 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10005969 [exp] 55 / 5e-08 AT2G46520 250 / 2e-77 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10004753 [exp] 57 / 6e-08 AT3G08960 1432 / 0.0 ARM repeat superfamily protein (.1) Lus10007842 [exp] 57 / 9e-08 AT3G08960 1493 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF08506 [poplar] [flax] Cse1 Cse1
Representative CDS sequence Show only first row Show all	>Potri.014G149600.2 pacid=42764200 polypeptide=Potri.014G149600.2.p locus=Potri.014G149600 ID=Potri.014G149600.2.v4.1 annot-version=v4.1 ATGGATCTCCCTAGCCTCGCTGTTGTCCTACAAGCCGCTCTTAGTCCCAATCCCGATGAACGCAAAGCCGCTGAGCAAAGACTCGATCAGTTCCAGTACA CTCCTCAGCATCTCGTGAGATTGCTGCAGATTATCGTGGACAATAATTGCGACATGGCTGTGCGTCAAGTAGCTAGTATTCACTTCAAGAACTTCATTGC TAGGAACTGGGCACCGCATGAGCCTGATGAGCAACCGAAGGTCTCACATAATGATAAAGCTATGGTGAGGGATCACATCCTAGTGTTTCTTGTGCAAGTT CCACCTTTGTTGAGGGTACAGCTGGGCGAATGTATCAAAACAATGATCCATGCTGATTACCCAGAGCAGTGGCCGCACCTTCTGGATTGGATCAAGCATA ACTTACAAGATCAGCAAGTTTATGGAGCTCTTTTTGTGTTGAGGATTCTTTCTAGAAAATACGAGTTCAAGTCGGATGAGGAGAGGACACCTGTTTATCG CATTGTTGAGGAGACATTCTCTCATCTCCTCAACATATTCAACAAGCTTGTCCAGATTCCGAATCCTTCTCTGGAAGTAGCAGATTTGATTAAGCTTATT TGTAAAATATTCTGGTCATCTATATATTTGGAGATTCCAAAGCAGCTATTTGATCCAAATGTCTTCAATGCTTGGATGGTTCTTTTCTTAACTGTTCTGG AGAGGCCTGTTCCTGTTGATGGCCAGCCTGTGGATCCCGAGCTTAGGAAGTCATGGGGATGGTGGAAGGTGAAGAAATGGACAATTCACATTTTGAACAG GCTATACACCCGGTTTGGAGATTTGAAACTTCAAAACCCAGAAAACAAAGCTTTTGCCCAAATATTTCAGAAAAATTTTGCTGGGAAGATTTTGGAGTGC CACTTGAATTTATTGAATGTGATCCGTGTTGGTGGCTATTTACCTGACAGAGTTATCAACCTAGTTCTTCAGTACCTAAGTAACAGTATCTCAAAGAATA GCATGTACAATCTACTGCAACCAAGACTTGACGTTCTTCTCTTTGAGATAGTTTTCCCCCTTATGTGCTTTAATGACAATGATCAGAAGCTCTGGGATGA AGACCCACATGAATATGTGAGAAAGGGTTATGATATCATTGAAGATTTGTACAGTCCAAGGACTGCTTCCATGGATTTTGTCAGCGAGTTGGTTAGAAAA CGTGGGAAGGAGAACCTTCAAAAGTTCATTCTATTCGTTGTGGAAATTTTTAAGAGATTTGATGAAGCACCATTGGAATATAAACCCTATCGACAAAAGG ATGGTGCTCTACTTGCTATTGGAGCACTTTGTGATAAGCTGAAACAAACTGACCCTTACAAATCTGAGCTGGAGCGTATGTTAGTGCAACATGTTTTCCC TGAGTTCAGCAGCCCTGCTGGCCACCTTAGAGCAAAGGCTGCATGGGTTGCTGGACAATATGCTCACATTAACTTCTCAGACCAGAACAATTTCCGTAAA GCTTTACACAGTGTTGTTTCTGGGTTGCGTGATCCAGAGCTTCCTGTGCGTGTTGACTCAGTTTTTGCATTGCGAAGCTTTGTTGAAGCCTGCAAAGATT TAAGTGAGATCCGTCCGATTCTTCCTCAACTTCTTGATGAGTTCTTCAAACTAATGAATGAGGTAGAGAATGAGGACTTGGTATTTACTCTGGAAACTAT AGTGGATAAATTTGGTGAGGAGATGGCACCCTATGCTCTTGGATTATGCCAGAATTTGGCAGCTGCATTTTGGAGATGCATGAATACTGCAGAAGCTGAT GACGAAGCTGACGATCCTGGTGCTTTAGCTGCAGTTGGTTGTTTGCGTGCAATAAGCACAATTCTCGAGTCAGTCAGCAGGCTACCTGATCTTTTTGTCC AAATTGAGCCAACTTTGCTTCCTATAATGCGTAGAATGTTGACAACCGATGGCCAAGAGGTGTTCGAAGAAGTTTTGGAAATTGTTTCATATATGACCTT TTTCTCTCCTACGATATCTACAGAGATGTGGTCTCTTTGGCCCTTGATGATTGAAGCACTGGCAGATTGGGCAATTGATTTCTTTCCTAACATTCTGGTT CCCTTGGACAACTATATATCCAGGGGGACTGCACATTTCCTTGCATGCAGAGAACCAGATTACCAACAAAGTCTTTGGAAAATGATTTCATATATCATGG CAGATAAAAACTTGGAAGACAATGACATAGAACCAGCACCAAAGCTTATTGAAGTGGTTTTTCAGAACTGTAAAGGGCAAGTGGATCAGTGGGTTGAGCC ATATATGAGAATCACTGTTGAGCGGTTGCGTCGAACTGAGAAATCATACTTGAAATGTCTTCTTATGCAAGTGGTTGCGGATGCTCTTTACTACAATCCA GCTTTGACCCTCAGCATATTGCACAAACTTGGTGTTGCTACTGAGATCTTTAATCTATGGTTCCAGATGTTGCAGCAAGTGAAAAAGAGTGGTGTACGGG CAAATTTTAAAAGGGAACATGATAAGAAAGTTTGTTGTTTGGGATTGACATCACTACTTGCTCTCCCTGCGGAGCAATTGCCAGGAGAGGCTCTGGGGCC AGTTTTCACGGCCACTCTTGATCTTCTAGTTCAATACAAGGATCAACTTGCAGAAGCTGCGAAGGAGGAAGAAGCTGAGGATCTTGGTGATATGGATGGC TTCCAGACTGATGACGAAGATGATGATGGTGATGGGTCTGATAAAGAAATGGGAGTTGATGCTGAGGATGGGGATGAAGCTGATAGCATTAAACTTCACA AGTTAGCTGCACAGGCAAAATCTTTCCGCCCACATGATGAGGATGACGATGACTCTGACGATGACTATAGTGATGATGAGGAGTTGCAATCACCGATTGA CGAGGTGGACCCTTTCATTTTCTTTGTGGACACTATCAAAGCCATGCAAGCATTGGATCCATTAAGGTTCCAGAACCTTACACAGACACTTGACTTTCAT TTTCAAGCGCTGGCAAACGGTGTTGCCGAGCATGCTGAGCTGAGGAGGGTAGTGATTGGAAAAGAAAAATTGGAGAAGACATCTGCTGCCGGTGCTTTGT AA
AA sequence Show only first row Show all	>Potri.014G149600.2 pacid=42764200 polypeptide=Potri.014G149600.2.p locus=Potri.014G149600 ID=Potri.014G149600.2.v4.1 annot-version=v4.1 MDLPSLAVVLQAALSPNPDERKAAEQRLDQFQYTPQHLVRLLQIIVDNNCDMAVRQVASIHFKNFIARNWAPHEPDEQPKVSHNDKAMVRDHILVFLVQV PPLLRVQLGECIKTMIHADYPEQWPHLLDWIKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFSHLLNIFNKLVQIPNPSLEVADLIKLI CKIFWSSIYLEIPKQLFDPNVFNAWMVLFLTVLERPVPVDGQPVDPELRKSWGWWKVKKWTIHILNRLYTRFGDLKLQNPENKAFAQIFQKNFAGKILEC HLNLLNVIRVGGYLPDRVINLVLQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRK RGKENLQKFILFVVEIFKRFDEAPLEYKPYRQKDGALLAIGALCDKLKQTDPYKSELERMLVQHVFPEFSSPAGHLRAKAAWVAGQYAHINFSDQNNFRK ALHSVVSGLRDPELPVRVDSVFALRSFVEACKDLSEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEAD DEADDPGALAAVGCLRAISTILESVSRLPDLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISTEMWSLWPLMIEALADWAIDFFPNILV PLDNYISRGTAHFLACREPDYQQSLWKMISYIMADKNLEDNDIEPAPKLIEVVFQNCKGQVDQWVEPYMRITVERLRRTEKSYLKCLLMQVVADALYYNP ALTLSILHKLGVATEIFNLWFQMLQQVKKSGVRANFKREHDKKVCCLGLTSLLALPAEQLPGEALGPVFTATLDLLVQYKDQLAEAAKEEEAEDLGDMDG FQTDDEDDDGDGSDKEMGVDAEDGDEADSIKLHKLAAQAKSFRPHDEDDDDSDDDYSDDEELQSPIDEVDPFIFFVDTIKAMQALDPLRFQNLTQTLDFH FQALANGVAEHAELRRVVIGKEKLEKTSAAGAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Potri.014G149600 [exp]	0	1
AT1G18070			Translation elongation factor ...		Potri.019G062500 [exp]	3.87	0.8925
AT5G60390			GTP binding Elongation factor ...		Potri.008G042700 [exp]	8.60	0.9048	Pt-ADR12.2
AT1G23170			Protein of unknown function DU...		Potri.008G131800 [exp]	10.81	0.8779
AT1G67680			SRP72 RNA-binding domain (.1)		Potri.006G216400 [exp]	12.84	0.8981
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Potri.001G019400 [exp]	14.42	0.8948
AT3G52590		HAP4, ERD16, UB...	HAPLESS 4, EARLY-RESPONSIVE TO...		Potri.016G077000 [exp]	16.12	0.9000	UBQ1.1
AT5G60390			GTP binding Elongation factor ...		Potri.008G043100 [exp]	16.73	0.8856	ADR12.3
AT5G26360			TCP-1/cpn60 chaperonin family ...		Potri.018G138200 [exp]	22.44	0.8866
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.007G040100 [exp]	23.68	0.8811
AT5G25757			RNA polymerase I-associated fa...		Potri.018G038500 [exp]	27.49	0.8790

Compare expression of checked genes

Potri.014G149600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.