Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59010 565 / 0 PME61, PME35 pectin methylesterase 61 (.1) AT2G43050 534 / 0 ATPMEPCRD, PME16 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 431 / 3e-145 ATPMEPCRA methylesterase PCR A (.1) AT5G53370 416 / 4e-139 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT3G49220 414 / 2e-138 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G23200 410 / 4e-137 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 399 / 1e-133 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G04960 395 / 3e-131 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10710 390 / 3e-129 RHS12 root hair specific 12 (.1) AT1G53830 381 / 1e-125 ATPME2 pectin methylesterase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G145500 [exp] 441 / 5e-150 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 439 / 5e-149 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 438 / 5e-148 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 433 / 2e-146 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 427 / 3e-144 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 421 / 5e-142 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G014500 [exp] 424 / 6e-142 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G025400 [exp] 416 / 1e-139 AT1G11580 638 / 0.0 methylesterase PCR A (.1) Potri.015G013700 [exp] 414 / 5e-138 AT3G49220 805 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025510 [exp] 572 / 0 AT3G59010 547 / 0.0 pectin methylesterase 61 (.1) Lus10026729 [exp] 416 / 5e-143 AT3G59010 409 / 2e-141 pectin methylesterase 61 (.1) Lus10029868 [exp] 412 / 4e-138 AT3G05620 684 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020677 [exp] 409 / 1e-136 AT3G05620 681 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 408 / 2e-135 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 405 / 2e-135 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 405 / 2e-135 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 393 / 1e-131 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10015877 [exp] 394 / 2e-131 AT3G60730 535 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 393 / 2e-130 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.014G149700.1 pacid=42764479 polypeptide=Potri.014G149700.1.p locus=Potri.014G149700 ID=Potri.014G149700.1.v4.1 annot-version=v4.1 ATGTACACCATGCCAAAATTCTTCCATGCAAATCCTCGAGACAAAAAAACCTCATTCATGGCGGCCCTATCAATACTTCTTATCATCAAAATCCTTTGCC TGGCTACTTTTGCAGAAGCTACCACTTCAAAACCTTTGCCATCTCAGTTCGCAAAATTGTCTAGGTCAACAACAACACCCGGAGCTCCATCATCCACTGA TACCTCTCCGTGCAAAGGCACCCCTTACAAAGCAGCCTGCCAATCTCTCCTCCTGACATTGAATACCAATAATAATGCTGATCTTCCTAAAACCCCGAAA GAACTCTTTGATTACTCAGTCCATTTCACCTCAAGCCAAGCTCACTCAGCCATAGACCAACTCGCTACCACATTCCTTGGCCAAACCTACCAGGAGATTG ACATGACTCATTTGCCTGGTAGTGGCATGAGAGACTGCATGGAGTTGCTTGATGATACCTTGGACCAACTCTCTAATGTCATCAATCGCAAGAATGACCC TACCCACACCCACAACGATGTCCAGACATGGCTTAGTGCTGCACTTACCAATCAAGAAACATGCAAAGAAAGCCTGCTTGAAAATGTTAAAAAAACTCAT TTAGAGAAGTTTAACGTAATAGATTCCATGGCAAAAAACTTAAGTCAATTTATAAGCAACTCTCTTGCACTTTATGTGTCCAGCTATGGACTCCCTAGTA CTAGTCCTCGTGGTCGGAAATTGTTGACGGACCAAAGTAATATTATTAATGATTTCCCAAGTTGGGTATCCTTGTCGGAAAGGAAGCTTCTAGAAGCTTC TGTAGGAGAGATAGAAGCCCATGCAGTAGTGGCAAGGGATGGGAGTGGGACCCATACCTCCATTGCAGAGGCAATCAGGCAGGTGGCGGCTTCTCTGGAT GGTGGGGGTAGAAATGTAATTTACATCAAAGCCGGGACTTATAAGGAGAACCTCAATATCCCTTCAAAGCAGAAGGACGTGCTTTTATATGGCGATGGGA AGGGTAAAACGGTCATTGTCGGTAGTAAAAATGCTGCAGATGGTTCCACAACTTACGACTCTGCCACAGTGGGCGTGATGGGGGATGGATTCATCGCGAA AGACATAACATTTGTGAACAGTGCCGGTCCGAGCAAGCACCAAGCTGTTGCCCTTCGAGTTGGATCCGATAGAGCAGTAATCTTTCGATGCTCAATCGAT GGTTATCAAGACACTCTCTATACTCTTTCCAAACGACAATTCTATCGAGAAACGGACATTTATGGCACAGTAGATTTCATTTTTGGTAATTCAGCAGTGG TTTTCCAGAACTGTAATATTTTTGCCAGGAATCCCGGAACAGGACAGAAGAATTTTGTGACTGCGCAAGGTCGCACTAGCCCTGATCAAAACACAGGCAT TTCTATACAAAACTGCCAGATAGAGGCGCAGTCAGTCACATATCTTGGTAGGCCATGGAAGCAATATTCTAGAACAGTTATAATGCAGTCCTCTTTGGAT GGTTCAATAGATCCTGCTGGTTGGTTTCCTTGGGCTGGTGGCTCCTCCCCCTCGTCAATCTATTATGGTGAATACTCGAACTCAGGCCCCGGCTCCTCTA CTTCCGGCAGGGTCAACTGGCCTGGCTATCATAGCTCGCTTACCTCCGTAGAAGCTCAAAAGTTCACGGTTGGTAGTTTCATTAGCGGGAATGTTTGGTT GCCCCCCACCGGAGTTGCTTTCGATTCTGGGCTGGGTGGTTAA
AA sequence Show only first row Show all	>Potri.014G149700.1 pacid=42764479 polypeptide=Potri.014G149700.1.p locus=Potri.014G149700 ID=Potri.014G149700.1.v4.1 annot-version=v4.1 MYTMPKFFHANPRDKKTSFMAALSILLIIKILCLATFAEATTSKPLPSQFAKLSRSTTTPGAPSSTDTSPCKGTPYKAACQSLLLTLNTNNNADLPKTPK ELFDYSVHFTSSQAHSAIDQLATTFLGQTYQEIDMTHLPGSGMRDCMELLDDTLDQLSNVINRKNDPTHTHNDVQTWLSAALTNQETCKESLLENVKKTH LEKFNVIDSMAKNLSQFISNSLALYVSSYGLPSTSPRGRKLLTDQSNIINDFPSWVSLSERKLLEASVGEIEAHAVVARDGSGTHTSIAEAIRQVAASLD GGGRNVIYIKAGTYKENLNIPSKQKDVLLYGDGKGKTVIVGSKNAADGSTTYDSATVGVMGDGFIAKDITFVNSAGPSKHQAVALRVGSDRAVIFRCSID GYQDTLYTLSKRQFYRETDIYGTVDFIFGNSAVVFQNCNIFARNPGTGQKNFVTAQGRTSPDQNTGISIQNCQIEAQSVTYLGRPWKQYSRTVIMQSSLD GSIDPAGWFPWAGGSSPSSIYYGEYSNSGPGSSTSGRVNWPGYHSSLTSVEAQKFTVGSFISGNVWLPPTGVAFDSGLGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59010		PME61, PME35	pectin methylesterase 61 (.1)		Potri.014G149700 [exp]	0	1
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.011G142800 [exp]	1.00	0.9298	Pt-TPS1.6
AT5G61520			Major facilitator superfamily ...		Potri.004G233700 [exp]	6.48	0.8911
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.011G064700 [exp]	10.00	0.8800
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048900 [exp]	12.24	0.8721
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Potri.017G125600 [exp]	12.96	0.8713
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Potri.010G179801 [exp]	15.42	0.8413
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G157750 [exp]	15.49	0.8675
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G157900 [exp]	16.70	0.8652
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.018G094800 [exp]	18.65	0.8566
					Potri.012G031150 [exp]	19.07	0.8550

Compare expression of checked genes

Potri.014G149700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.