Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43110 309 / 9e-106 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001158 [exp] 295 / 8e-101 AT2G43110 245 / 4e-81 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF14617 [poplar] [flax] CMS1 U3-containing 90S pre-ribosomal complex subunit
Representative CDS sequence Show only first row Show all	>Potri.014G150100.1 pacid=42762360 polypeptide=Potri.014G150100.1.p locus=Potri.014G150100 ID=Potri.014G150100.1.v4.1 annot-version=v4.1 ATGGGAAGCGGGAAACCAGAAAGACACTCAAAGACAAAGGAGAAGAAGGGGTTATCTCTCAGAAACCCTAGTAAAAAAATCAACTTCAAGAAGAAAACGG GTATCAACAAGAAGACTGACCAATCCAAAAACGAAGAAAACCAGAACAAGAGCGAGGCTTCTACCCCAGCTTCAGCTTCCCAGCAGCTTAGTTTTTTCAT AAGCGAGTTTCAATCTGCCAATGGGGTTCAGCTTTCATCTATTGAGCTCGAATCAATTAAGGAGACCTGCTTTGCTGAGTTATCTCAAGAATCGGGTCAA GATGTTATGGCCTTAGGGAGCCACATGAAGGCGGCTTTTGGCCCATCTTGGAAACAAGTTCTTTGTGAAGGGAAGTTGGTGGAAGGCATTATTGATCCAG GGAGTCCTGCTGTTCTTATTATTTCTACATCTGCCTTGAGATCTCTAGAACTTCTAAGGGGTGTGCGCTCTTTGACGAAAGAATGTCATGCTGCGAAGCT ATTCTCCAAGCATATGAAGGTCGAGGAACAGGTAGCCATGTTGAAGAACCGCGTAAATTTTGCTAGCGGCACACCCAGCAGGGTAAAGAAGTTGATCGAC ATTGAGGCATTGGGGCTTTCACGGTTAACAATGATTGTACTTGACATGCAAGCAGATGTCAAGGGTTATTCATTGTTTACCCTTCCGCAAGTCAGAGACG AGTTCTGGGACTTGTATAAAGATTTCTTCCATCAACGACTATTGCAAGGCCATCTACGCATCTGTCTATTTGGTCCTATACCAAGCGCAAACGGTAAGGA GTTCAAGGGTAAAAAAGAAGAGTCCCTAATGAACAAGTAG
AA sequence Show only first row Show all	>Potri.014G150100.1 pacid=42762360 polypeptide=Potri.014G150100.1.p locus=Potri.014G150100 ID=Potri.014G150100.1.v4.1 annot-version=v4.1 MGSGKPERHSKTKEKKGLSLRNPSKKINFKKKTGINKKTDQSKNEENQNKSEASTPASASQQLSFFISEFQSANGVQLSSIELESIKETCFAELSQESGQ DVMALGSHMKAAFGPSWKQVLCEGKLVEGIIDPGSPAVLIISTSALRSLELLRGVRSLTKECHAAKLFSKHMKVEEQVAMLKNRVNFASGTPSRVKKLID IEALGLSRLTMIVLDMQADVKGYSLFTLPQVRDEFWDLYKDFFHQRLLQGHLRICLFGPIPSANGKEFKGKKEESLMNK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43110			unknown protein		Potri.014G150100 [exp]	0	1
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Potri.010G114400 [exp]	1.00	0.8259	/IMPCH1
AT1G20370			Pseudouridine synthase family ...		Potri.005G247000 [exp]	4.24	0.8200
AT4G24830			arginosuccinate synthase famil...		Potri.010G239000 [exp]	7.41	0.7693
AT1G20220			Alba DNA/RNA-binding protein (...		Potri.005G194600 [exp]	9.53	0.7626
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Potri.002G157100 [exp]	9.94	0.7770
AT4G15010			Mitochondrial substrate carrie...		Potri.001G222400 [exp]	12.48	0.7714
AT3G57050		CBL	cystathionine beta-lyase (.1.2...		Potri.016G038200 [exp]	16.43	0.7573	CBL.1
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Potri.007G064800 [exp]	17.46	0.7034
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Potri.010G002300 [exp]	17.54	0.7523	Pt-RPL3.3
AT1G20220			Alba DNA/RNA-binding protein (...		Potri.002G066100 [exp]	17.86	0.7543

Compare expression of checked genes

Potri.014G150100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.