Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PRN.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43120 462 / 7e-165 RmlC-like cupins superfamily protein (.1) AT3G59220 401 / 2e-141 ATPIRIN1, PRN1, PRN pirin (.1) AT1G50590 369 / 1e-128 RmlC-like cupins superfamily protein (.1) AT3G59260 352 / 4e-122 pirin, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G231900 [exp] 612 / 0 AT2G43120 452 / 6e-161 RmlC-like cupins superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001159 [exp] 509 / 0 AT2G43120 436 / 1e-154 RmlC-like cupins superfamily protein (.1) Lus10019561 [exp] 506 / 0 AT2G43120 436 / 9e-155 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF02678 [poplar] [flax] Pirin Pirin CL0029 [poplar] [flax] Cupin PF05726 [poplar] [flax] Pirin_C Pirin C-terminal cupin domain
Representative CDS sequence Show only first row Show all	>Potri.014G150200.1 pacid=42764480 polypeptide=Potri.014G150200.1.p locus=Potri.014G150200 ID=Potri.014G150200.1.v4.1 annot-version=v4.1 ATGAGAGCTTCTTTTTATCGAAATTTTCTGAAGAGATTATATCCACCAACTACTACCAAGGCTAGTAACAGTATACACCGTATCAGAAATATCATGTCTG AATCAGATCAATCCATTGGTTTCGACACACCCAGATTGGTGACCAAGAAGATCCTGGCCAAGCTCCAACATGAAGGTGATGGTGCTGTTGTTAGAAGAGG CATTGGAAGGAGTGAACAGAAGTTCTTGGATCCTTTTCTCATGCTGGATGATTTTTCAGTGTCTCCTCCTGCTGGATTTCCTGATCATCCGCACAGAGGT TTTGAGACTGTTACATACATGCTGCAGGGAAGCATCACTCATCAGGACTTTGCAGGGCACAAGGGTACAATCCATACCGGAGATGTGCAGTGGATGACAG CAGGAAGAGGCATCATCCACTCAGAAATGCCTGCCGGAGAAGGTGCTCAAAAGGGTCTGCAGCTGTGGATAAATCTATCTTCCCAAGACAAAATGATTGA ACCTAGGTATCAAGAACTTTTAAGTGATGACATAAAAAGAGCAGAGAAAGACGGGGCTGAAGTGAGAATTATAGCAGGGGAATCGATGGGAGTGCGATCT CCAGTTTATACCAGAACACCAACAATGTATTTGGATTTCACTCTGAAACCCAGAGCTCAAGTGCATCAAAATATCCCAGAATCATGGAATGGATTTGTGT ATGTTATTGAAGGTGAAGGGGTCTTCGGCAAGCCAAATTCTTCATCCTCAACTGCTCATCATGTCCTGGTTTTAGGTCCTGGAGATGGTTTGAGTGTGTG GAACAGATCTTCTAAGCCATTGCGATTTGTGCTGATTGCCGGACAGCCAATTAACGAGCCTGTGGTTCAGTATGGACCTTTTGTGATGAACACAGAGGCA GAAATTGATCAAACCATTGAGGACTACCACTATAGCAAAAATGGGTTTGAAATGGCCAAGTATTGGAGATCCCAATGA
AA sequence Show only first row Show all	>Potri.014G150200.1 pacid=42764480 polypeptide=Potri.014G150200.1.p locus=Potri.014G150200 ID=Potri.014G150200.1.v4.1 annot-version=v4.1 MRASFYRNFLKRLYPPTTTKASNSIHRIRNIMSESDQSIGFDTPRLVTKKILAKLQHEGDGAVVRRGIGRSEQKFLDPFLMLDDFSVSPPAGFPDHPHRG FETVTYMLQGSITHQDFAGHKGTIHTGDVQWMTAGRGIIHSEMPAGEGAQKGLQLWINLSSQDKMIEPRYQELLSDDIKRAEKDGAEVRIIAGESMGVRS PVYTRTPTMYLDFTLKPRAQVHQNIPESWNGFVYVIEGEGVFGKPNSSSSTAHHVLVLGPGDGLSVWNRSSKPLRFVLIAGQPINEPVVQYGPFVMNTEA EIDQTIEDYHYSKNGFEMAKYWRSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43120			RmlC-like cupins superfamily p...		Potri.014G150200 [exp]	0	1	PRN.1
AT4G38040			Exostosin family protein (.1)		Potri.010G197900 [exp]	20.90	0.6729
					Potri.003G152200 [exp]	22.62	0.7082
AT5G47320		RPS19	ribosomal protein S19 (.1)		Potri.013G129600 [exp]	33.09	0.7063
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.009G149900 [exp]	37.04	0.6975
AT3G12570		FYD	FYD (.1.2.3.4)		Potri.008G054100 [exp]	38.80	0.7013
AT3G43740			Leucine-rich repeat (LRR) fami...		Potri.009G090700 [exp]	47.96	0.6790
AT5G10870		ATCM2	chorismate mutase 2 (.1)		Potri.018G019250 [exp]	50.82	0.6706
AT3G14360			alpha/beta-Hydrolases superfam...		Potri.003G073800 [exp]	68.83	0.6417
AT4G29090			Ribonuclease H-like superfamil...		Potri.018G042350 [exp]	71.83	0.6563
AT5G48655			RING/U-box superfamily protein...		Potri.002G245500 [exp]	74.49	0.6294

Compare expression of checked genes

Potri.014G150200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.