Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05790 623 / 0 lipase class 3 family protein (.1.2) AT2G42450 49 / 1e-05 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G231567 [exp] 437 / 4e-149 AT1G05790 229 / 2e-71 lipase class 3 family protein (.1.2) Potri.002G231501 [exp] 266 / 1e-84 AT1G05790 100 / 7e-25 lipase class 3 family protein (.1.2) Potri.002G231534 [exp] 248 / 1e-77 AT1G05790 179 / 6e-54 lipase class 3 family protein (.1.2) Potri.002G231450 [exp] 121 / 2e-32 AT1G05790 47 / 4e-07 lipase class 3 family protein (.1.2) Potri.005G222000 [exp] 49 / 1e-05 AT2G42450 643 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019567 [exp] 492 / 4e-168 AT1G05790 399 / 4e-133 lipase class 3 family protein (.1.2) Lus10019566 [exp] 217 / 2e-64 AT1G05790 263 / 3e-84 lipase class 3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Potri.014G150800.2 pacid=42764728 polypeptide=Potri.014G150800.2.p locus=Potri.014G150800 ID=Potri.014G150800.2.v4.1 annot-version=v4.1 ATGGCAATGTGGGTTTCTTCAACGGTGAACAGTTTGCGAATAAGTACGATAATGTTGGGTTTTTCAAATCTAGCTGTGGTGATTGTTGGTGGGGTTCTTT TGTTTCTTGTGTTTCCTGGTTGTGAACTTAACAGAATAACTATTCCTGTTGCAATGGTGTCTTTGGCTGCTGCTTTCAAAATATTTGCCATGTTTAAGTC TGGGATTGCACAAAAGGCTACTGCCTTTTCCATTCTTGATTCTCCTCTTGATTCTTCTGCTATCGACTCCATTAATCGTCTTCGAAGACGGCTGAGGTAC AAAACATGGCTTTGGTGGAGTCGTTTTGCATTGGTAATGACTCTGCTGCAAATTTTAACTGCAATTTACCTTGTGTTTAATGTGGTTAAATATATCTCTC ATGATGGGACATCAAGTGAATGTCAACCAGGGACAGCTTCAAATGGTAACAAGTGGAAGACAAAACTACTCATTTCATTTGTTATCGCAGTCTGTACTAT TCCACTAATCCATATTTTTGTGGGACCTGCGGTCCTAAGATGGAGGTCTTTTTATCAAACCCAAGATGATGTATGGAAGGCACACTATCAAGAGGTGTTT GACCATGGAATTCGTGAGGCTTTGTGCTGTCTGGGGCGTGTCAAATACATGCGGGTGTCCAAGGAAGATGAAGTTTACTCAGTAGCACGATTATTGGGTG ATCTTGTTGCCTATCGGGCATCAGGCACTGGACATTTAGAACTTCTGGCAGGTCTAGCTTTGTTGCAGAGGCATAGCGAATCCCCTAAATCTCACGATGG ATTGGTAGAAGCACCTAGAGAAATGATTCAGGAGGCCTTTGCTTTTCATGAATTTGCTGAAGCTGCATACACTGGTCCATTGCTTGATTTTGGAAGACAT ACTGTATTTTTTCCTTGTGCATGGCTCTACAGGCAAAGGATTTTGACTCCATGGACTCGTAACAGGCGGCCTTCTCTCTCTGGAGATAACTGGTGGCGGG GTCATGCAGCAGCCTTTTTAAAATATACTAATTTACCCCCAGAAGCACTTCGACGTGGTCGTGTTTGTCAGGAAAAATGTGAAGCTGCATACTTCGTTGT GGTTCTACGCCATCTAAGATCTGTAGTGATCTCTGTACGAGGAACTGAGACCCCTGAAGACCTCATAACAGATGGTTTGGGAAGAGAATGCCTCCTTTCT AGAGAAGACTTGGATGGGTTGATAAATAGCAGCCATATTTGCCCTGATGTGAAGCGAAGTGTGGAATCATCTTTTCCACACTATGGACACTCAGGCATAG TTGAGGCTGCACGTGATCTTTACATGCAACTTGAAGGAAATCTTGCAAATAATGATACAGAATCAGAAAGCAGCTCTGGCTTCCTTTCCTCATTGCTGGG AGCTGGATGTGAGTGTGATGGATATAGTCTGCGCATAGTTGGCCATTCCCTAGGAGGTGCCATTGCTGCTTTGCTAGGACTGAGGCTATATCGCCAGTAC CCAGCTTTACATGTCTATGCATATGGACCCCTTCCATGTGTGGATTTGGTCATAGCAGAGGCATGTTCAGAGTTTGTTACAAGCATTGTACACAACAATG AATTTTCTGCACGGCTTTCAGTTGGATCAGTCCTACGGCTTCGTGCTGCTGCAATTGAGGCACTCGCTCAGGATTCCAAGACTGATACAGCCTTGATTTT TAGGCTAGCTCGTCAATTTCTCTGTGTGAGCAAGAATCAAAGGGGGAAGATTGAGGCAGCTGATCCATCAGAGCTACATTCTGCAGCCTCCACAGTAGAT GAACTGGATCAAAAAGTCTATGTGGGAAGCAACAAGGTGGATCGAAGTTATTCTCTCTGGAAAGAATCAGACAGGACCAATAGTGGAGACAGGACCAATA GTGGCGGTGATACAGAGGATGACAATATTGAAAATCCATTTTATGATAACACTTCTGTCATAAATTCATTGGACGATCCTGTATCACAATTTTTGGAAAC TGTCCCTAGATCTGAAAATGGATCAGCAGGGGATCGTGCAGAGATGTTTCTACCAGGCCTTGTGATTCATATGGTACCCCAACAAAGGCACATCAGTATG CCATTATGGAAGGGCTGGAGATTTCAAGAGCGTGTACGGAATTATAAAGCTTATTTAGCAAACAGAGATGTCTTTAAAGATATTGTTGTGTCACCAAATA TGTTCTTTGATCATCTACCTTGGAGATGTCACAATGCCATGAAAAGGGTGCTGGAATCTCAAAATGACAAAGGCATGCTTGACGTATCTCAAATCATTTG A
AA sequence Show only first row Show all	>Potri.014G150800.2 pacid=42764728 polypeptide=Potri.014G150800.2.p locus=Potri.014G150800 ID=Potri.014G150800.2.v4.1 annot-version=v4.1 MAMWVSSTVNSLRISTIMLGFSNLAVVIVGGVLLFLVFPGCELNRITIPVAMVSLAAAFKIFAMFKSGIAQKATAFSILDSPLDSSAIDSINRLRRRLRY KTWLWWSRFALVMTLLQILTAIYLVFNVVKYISHDGTSSECQPGTASNGNKWKTKLLISFVIAVCTIPLIHIFVGPAVLRWRSFYQTQDDVWKAHYQEVF DHGIREALCCLGRVKYMRVSKEDEVYSVARLLGDLVAYRASGTGHLELLAGLALLQRHSESPKSHDGLVEAPREMIQEAFAFHEFAEAAYTGPLLDFGRH TVFFPCAWLYRQRILTPWTRNRRPSLSGDNWWRGHAAAFLKYTNLPPEALRRGRVCQEKCEAAYFVVVLRHLRSVVISVRGTETPEDLITDGLGRECLLS REDLDGLINSSHICPDVKRSVESSFPHYGHSGIVEAARDLYMQLEGNLANNDTESESSSGFLSSLLGAGCECDGYSLRIVGHSLGGAIAALLGLRLYRQY PALHVYAYGPLPCVDLVIAEACSEFVTSIVHNNEFSARLSVGSVLRLRAAAIEALAQDSKTDTALIFRLARQFLCVSKNQRGKIEAADPSELHSAASTVD ELDQKVYVGSNKVDRSYSLWKESDRTNSGDRTNSGGDTEDDNIENPFYDNTSVINSLDDPVSQFLETVPRSENGSAGDRAEMFLPGLVIHMVPQQRHISM PLWKGWRFQERVRNYKAYLANRDVFKDIVVSPNMFFDHLPWRCHNAMKRVLESQNDKGMLDVSQII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05790			lipase class 3 family protein ...		Potri.014G150800 [exp]	0	1
AT1G65780			P-loop containing nucleoside t...		Potri.004G077800 [exp]	1.41	0.8328
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.008G108800 [exp]	2.44	0.7813
AT2G26310			Chalcone-flavanone isomerase f...		Potri.018G048500 [exp]	5.29	0.7232
AT3G12590			unknown protein		Potri.010G207900 [exp]	7.07	0.7710
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Potri.013G039600 [exp]	8.00	0.7958
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Potri.002G055300 [exp]	8.12	0.7649
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Potri.016G041000 [exp]	8.48	0.7415
AT4G31810			ATP-dependent caseinolytic (Cl...		Potri.006G264200 [exp]	9.16	0.7714
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Potri.005G257300 [exp]	12.64	0.7310
AT5G39590			TLD-domain containing nucleola...		Potri.002G024966 [exp]	19.39	0.7470

Compare expression of checked genes

Potri.014G150800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.