Plant FIBer expression Database

Potri.014G151300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43160 644 / 0 ENTH/VHS family protein (.1.2.3.4)
AT3G59290 491 / 3e-158 ENTH/VHS family protein (.1)
AT5G11710 242 / 7e-70 ENTH/VHS family protein (.1)
AT3G23350 77 / 5e-15 ENTH/VHS family protein (.1)
AT3G46540 73 / 2e-13 ENTH/VHS family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G231100
[exp]
1140 / 0 AT2G43160 317 / 1e-96 ENTH/VHS family protein (.1.2.3.4)
Potri.006G234100
[exp]
234 / 9e-67 AT5G11710 479 / 2e-164 ENTH/VHS family protein (.1)
Potri.001G239200
[exp]
76 / 2e-14 AT3G46540 263 / 8e-87 ENTH/VHS family protein (.1)
Potri.009G030500
[exp]
69 / 2e-12 AT3G46540 270 / 2e-89 ENTH/VHS family protein (.1)
Potri.008G055600
[exp]
50 / 3e-06 AT3G46540 182 / 6e-56 ENTH/VHS family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025527
[exp]
756 / 0 AT2G43160 716 / 0.0 ENTH/VHS family protein (.1.2.3.4)
Lus10026741
[exp]
722 / 0 AT2G43160 705 / 0.0 ENTH/VHS family protein (.1.2.3.4)
Lus10019571
[exp]
643 / 0 AT2G43160 588 / 0.0 ENTH/VHS family protein (.1.2.3.4)
Lus10007460
[exp]
238 / 4e-68 AT5G11710 538 / 0.0 ENTH/VHS family protein (.1)
Lus10005498
[exp]
226 / 8e-63 AT5G11710 489 / 4e-166 ENTH/VHS family protein (.1)
Lus10011810
[exp]
87 / 1e-17 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1)
Lus10021173
[exp]
86 / 1e-17 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1)
Lus10040824
[exp]
76 / 2e-14 AT3G46540 277 / 1e-92 ENTH/VHS family protein (.1)
Lus10016556
[exp]
74 / 9e-14 AT3G46540 266 / 3e-88 ENTH/VHS family protein (.1)
Lus10040297
[exp]
49 / 8e-06 AT3G46540 191 / 9e-60 ENTH/VHS family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0009 ENTH_VHS PF01417 ENTH ENTH domain
Representative CDS sequence
>Potri.014G151300.4 pacid=42763095 polypeptide=Potri.014G151300.4.p locus=Potri.014G151300 ID=Potri.014G151300.4.v4.1 annot-version=v4.1
ATGAAGAAGGTCTTTGGTCAAACTGTCAGGGACTTCAAGAGAGAGGTTAATAAGAAAGTTCTCAAAGTTCCTTCGATAGAGCAGAAGGTTCTTGATGCTA
CCAGCAATGAACCTTGGGGTCCACATGGATCACTGCTTGCAGATATTGCGCAGGCATCAAGAAATTATCATGAATACCAGATGATCATGGCAGTTCTCTG
GAAACGAATTAATGATACTGGGAAGAATTGGCGGCATGTCTACAAGGCTTTGACTGTTTTGGAATACCTGGTTGCTCATGGATCAGAGCGTGCCATAGAT
GAGATTAGGGAACATTCTTATCAAATAACGACATTGTCAGATTTCCAATATATTGATTCCAGCGGAAAGGACCAGGGTAACAATGTCAGGAAGAAATCCC
AGAGCCTTGTGGTCCTGGTGAATGATAAAGAAAGGATAGTTGAGGCTAGACAGAAGGCTGCTGCTAACAGGGACAAGTTTCGCAACGCATCACCTGGTGG
AATGAATAGACCTGGTTCTTATGATGATGACGGTCGCTATGGAAACAGGGATGAAGATCGAAATGGATATGGTTATGGCAAAGAAAGAGAATACAATTAT
AGGGATGATGAACGGTATGGTAAATATGGGGACTCGTATGGTCGTGATGGAGATCATAATGGTGAAGAACGGTATGGTAGGGATGGATATAGGGATGATG
ACTATCAGGGAAGAAGCCGAAGCATTGATGATTACGGTTCAAGAAGCAGGAGCTCTGATAGAGATAGAGATCATGCTTTTGATGATGATGGTCAATCCTC
TTCTCGTGGCGCTAGAGCTGATGATCAGTCTCATGACGGAAGCATTGCTAAGCGGCTTGAGCGAAAATTTTCTGAGCAAAATATTAGTGGTCCACCCAGC
TATGAAGAAGCCTTAAGTGAATCCCGAAGCCCTGCTCACAGTGAAAGGAATGGAGAAGCTTTAGCAGTACCTGCTCCTGTAGCTTCTTCTCCACCAGCTC
CTAGATCTTTCTCTCCACCTGCTTTTAATGCTGCTTCTCCACCTCCAAGCAATCCTGGACAAGAAAACACTTTTTTTGCGACGCCTGCATCTCCTGCAGA
CCAGGAAGTTGTGGTGGCTGATGAATTTGATCCACGTGGTCCTATTTCAGCTCCCCCTACTGCCACATCTGTTCAAACTGCCTCTGCTTTCACTCCGACT
TCGAACAATGCTGAAATGGACTTACTTGGCTCTTTATCAGATGTGTTTACTCCAAATCCATTAGCCATCATGCCAGTTACTTCTGCAACAACTACCTCTG
AAGCTGATTCTCAAACAAACTTTTCAGGATCCATGTTTGCTGCAACACAATCACCATCAAATGTTATGAATCAGGCTTTTGAAGATCCATTTGGTGACTC
TCCTTTCAAAGCTACTCCTACAGATGCTTTCTCAGCTCAACAGCCCACTGCTTCTTCTGCCCCTTTCCAGCCTACCATGAATCAAAATACAGAAATGCCC
AATGCAGTAGCACCACCAAATGGTGACACATTCTCTGCCATGACTTATTCAGCACCCAATGTTCAACCTCCTTCAACAAATCCACACTTTTTGCCTCAAG
AAATGTCAAGTTCTCATCCAGAAACTGATATTCTGGCAGACATCCTCCCACCATCTGGTCCATCTGCTGTAGCTTCACAGGCAGGTTTTTCACTTCCATC
TGGCCAACATCCACAGCCAGGTGCTAGTGTGTATGGGAACTTCAATTCACCACCAGGGAATATGGTATTGCTGGCAGCTCCACACATGGCTCCTCAGGGC
CAGCAATTAAGCAGTGCAAACTTCTTTACACAGGGAGGATCCCCAGCTCCTATCCATTCCAACATGTCTCTACAACCTCCGGCTGGGCCAGTGGTGCTGT
TTAATAATGGAAACTTAGTTCCACAACAAGGTTCTACGGCTCCAGTTGTCTCACAATTTTCTCATCATACACCGACTGGATCAGCACCACAATATAACAG
TGGAAACTTTCTCCCACAACATGGCTCTACTTTCCCAGTCGCGTCACAATTTACTTACCAAACTCCACCTGCTTCATCTCCTCAACATAATGATGTCCTG
GGTAATTTGTTTTCACAAGGGCCAAACACTTCCATGGCTTCTCAGACAGCTCTTCCATCTTCAACAGGGTCGCTTGCTATAGTTCCTCAACCATCCAAGG
ACAAATTTGAGACTAAGTCAACAGTGTGGGCAGATACTCTGAGTAGAGGGCTGGTCAATTTGAATATTTCTGGACGTGAGTATATCCAGTATTTAAAAGC
AAACAAAACATCTAAAACCAATCCATTAGCTGACATTGGAGTCGATTTTGATGCCCTTAATCGCAAGGAAAAGAGAATGGAAAAACAGCCCATGACTCCA
GTTGTATCTACTATCACCATGGGCAGAGCTATGGGATCTGGTACTGGGTTAGGCCGAGCTGGTGCAGGTGTTCTCAGGCCACCTCCAAACCCTACGATTG
GTTCTGGCATGGGAATGGGTGGGGGTGTGAATATGGGCATGGGCATGGGTATGGGTGGTCCTGGTTCAGGCATTGGCATGGGAGGTTATGGAGGAATGCA
ACAACCCATGGGTGGTGTGGGTATGGGAGCAGGGATGAATGCGGGCATGAATATGGGAATGATGCAAGGTGGCCAGATGCCTCCTGGATCGGCCATGCCT
GGTGGATATAACCCCATGATGGGCTCTGGTGGTTACCCGTCCCAACAACCCTATGGTGGTGGATATCGATGA
AA sequence
>Potri.014G151300.4 pacid=42763095 polypeptide=Potri.014G151300.4.p locus=Potri.014G151300 ID=Potri.014G151300.4.v4.1 annot-version=v4.1
MKKVFGQTVRDFKREVNKKVLKVPSIEQKVLDATSNEPWGPHGSLLADIAQASRNYHEYQMIMAVLWKRINDTGKNWRHVYKALTVLEYLVAHGSERAID
EIREHSYQITTLSDFQYIDSSGKDQGNNVRKKSQSLVVLVNDKERIVEARQKAAANRDKFRNASPGGMNRPGSYDDDGRYGNRDEDRNGYGYGKEREYNY
RDDERYGKYGDSYGRDGDHNGEERYGRDGYRDDDYQGRSRSIDDYGSRSRSSDRDRDHAFDDDGQSSSRGARADDQSHDGSIAKRLERKFSEQNISGPPS
YEEALSESRSPAHSERNGEALAVPAPVASSPPAPRSFSPPAFNAASPPPSNPGQENTFFATPASPADQEVVVADEFDPRGPISAPPTATSVQTASAFTPT
SNNAEMDLLGSLSDVFTPNPLAIMPVTSATTTSEADSQTNFSGSMFAATQSPSNVMNQAFEDPFGDSPFKATPTDAFSAQQPTASSAPFQPTMNQNTEMP
NAVAPPNGDTFSAMTYSAPNVQPPSTNPHFLPQEMSSSHPETDILADILPPSGPSAVASQAGFSLPSGQHPQPGASVYGNFNSPPGNMVLLAAPHMAPQG
QQLSSANFFTQGGSPAPIHSNMSLQPPAGPVVLFNNGNLVPQQGSTAPVVSQFSHHTPTGSAPQYNSGNFLPQHGSTFPVASQFTYQTPPASSPQHNDVL
GNLFSQGPNTSMASQTALPSSTGSLAIVPQPSKDKFETKSTVWADTLSRGLVNLNISGREYIQYLKANKTSKTNPLADIGVDFDALNRKEKRMEKQPMTP
VVSTITMGRAMGSGTGLGRAGAGVLRPPPNPTIGSGMGMGGGVNMGMGMGMGGPGSGIGMGGYGGMQQPMGGVGMGAGMNAGMNMGMMQGGQMPPGSAMP
GGYNPMMGSGGYPSQQPYGGGYR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G43160 ENTH/VHS family protein (.1.2.... Potri.014G151300
[exp]
0 1
AT4G29680 Alkaline-phosphatase-like fami... Potri.006G150900
[exp]
2.44 0.8268
AT5G22000 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) Potri.008G149300
[exp]
3.46 0.8411
AT2G43160 ENTH/VHS family protein (.1.2.... Potri.002G231100
[exp]
6.92 0.8214
AT5G06390 FLA17 FASCICLIN-like arabinogalactan... Potri.010G198250
[exp]
14.14 0.8169
AT5G01970 unknown protein Potri.006G111900
[exp]
14.69 0.7632
AT1G19170 Pectin lyase-like superfamily ... Potri.018G062700
[exp]
18.33 0.8061
AT1G20760 Calcium-binding EF hand family... Potri.002G008600
[exp]
22.71 0.7586
AT5G16300 Vps51/Vps67 family (components... Potri.010G177200
[exp]
25.69 0.7848
AT5G06390 FLA17 FASCICLIN-like arabinogalactan... Potri.019G008400
[exp]
27.38 0.7917
AT1G11480 eukaryotic translation initiat... Potri.007G119200
[exp]
33.66 0.7225

Potri.014G151300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.