Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47980 956 / 0 SCC3, ATSCC3 sister-chromatid cohesion protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G230800 [exp] 1357 / 0 AT2G47980 1292 / 0.0 sister-chromatid cohesion protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015341 [exp] 1081 / 0 AT2G47980 1347 / 0.0 sister-chromatid cohesion protein 3 (.1) Lus10008306 [exp] 989 / 0 AT2G47980 1261 / 0.0 sister-chromatid cohesion protein 3 (.1) Lus10023798 [exp] 173 / 4e-44 AT2G47980 371 / 3e-111 sister-chromatid cohesion protein 3 (.1) Lus10034339 [exp] 167 / 3e-42 AT1G25350 1290 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G151400.2 pacid=42763555 polypeptide=Potri.014G151400.2.p locus=Potri.014G151400 ID=Potri.014G151400.2.v4.1 annot-version=v4.1 ATGCTGAAAATAAGAAACGAACAGAAGGGCCTCGTTTGGAGTCCCTTAATAAAAGGTTATGATAAGATACTTGTACTAGAGGAAATGATGCGCAAAATAT TTTCTGGGTTATTCGTGCATCGGTACCGGGATATTGATCCTAATATTCGAACATCATGCATTGAGTCTCTTGGTGTATGGGTTTTGTCATATCCATCACT TTTCTTGCAGGATTTATACTTAAAGTATCTTGGATGGACACTTAATGATAAAAATGCAGGTGTCAGAAAAGCATCTGTTCATGCATTGCAAAAACTTTAT GACGCGGATGATAACGTGCCCACTCTCGGACTATTTACTGAAAGATTTTCCAACCGGATGATCGAACTTGCTGATGACAGTGATGTTAGTGTAGCTGTTT GTGCCATAGGACTTGTAAAACAATTACTCAGGCATCAGCTTTTACCTGATGATGACTTGGGTCCATTATATGATTTACATATTGATGATCCAGCGGAAGT CAGGCGTGCCATAGGAGAATTGGTGTATGATCACTTAATTGCACAAAAATTTAATAGCCCCCAATCTAGTTCAAGAGGCAGTGACAGTGGCTCTTCTGAG GTTCATCTTAGCAGAATGTTGCAAATTTTGAGGGAGTTTTCAGCAGAACCAATTCTCAGCATCTATGTTATTGATGATGTTTGGGAATACATGAAAGCAA TGAAGGATTGGAAGTGTATTATTTCCATGCTCCTGGATGAGAATCCACTAATTGAGCTTACCGATGATGATGCAACAAATTTGGTTAGACTCCTTTCTGC ATCTGTCAGAAAGGCTGTAGGAGAGAGGATTGTTCCAGCTTCGGATACTCGAAAGCAATATTACAATAAAGCTCAGAAAGAAATATTTGAAAACAATAGA CGACACATAACAATTGCAATGATGAAGAACTACCCATTACTTCTCCGCAAATTTATGGCTGACAAAGCAAAAGTTCCATCATTGGTTGAGATCATTGTTC ATATGAACCTAGGGAAAGCAAAAGTTCCATCATTGGTTGAGATCATTGTTCATATGAACCTAGGGCTTTATTCCTTAAAGAGGCAGGAGAATAATTTCAA AAATGTCCTTCAGCTCATGAAACAGGCTTTTTTAAAACATGGTGACAAGGAAGCGCTGAGATCTTGTGTGAAGGCTATTAAGTTCTGTTCCACTGAGAGT CAAGGCGAGCTGAAAGATTATGCTCTAAATAAATTGAAGAATCTTGAAGATGAACTTAATGATAAGCTTAAGTCTGCAATGAAAGAAGCAGCAGATGGTG ATGAATATTCTCTGCTTGTGAATTTGAAAAGGTTATATGAGCTTCAGTTGTCATGGTCTGTACCTATTGAGAGCTTATACGAGGATATTGTTAAGGTTCT CCACAGTTTTAGAAATGTGGATGATGAGGTTGTCAGTTTTCTTCTTCTCAATATGTATTTGCATGTAGCCTGGACACTGCAGTCTATTGTAAATAGTGAA ACTGTCTCTGAAGCATCCTTAACCTCTCTACTGTCGAAACGCAATTCCTTGTTTGAGGAACTTGAGTATTTTCTTGGTACCCCTTCTGAAGACAAGGAAG GGAGCAAATGTGGAAATCAGCTAGCTTGTAGAGTTTGTATTATACTTGCAGAAGCATGGTGTTTGTTTAGAAAGGCAAATTTTTCTTCAACAAAGCTCGA ACATCTAGGATATTGTCCAGATACATCTGTTCTACAAAGGTTCTGGAAACTTTGTGAACAACAGTTAAATATTTCAGATGAGACAGAAGATGATGACACA AAGAAAGAGTACATTGAGGAGACAAACAGAGATGCAGTTATGATAGCTTCAGCAAAGTTGGTAGTTAGCAATGCAGTTCCCAAGGAATATCTTACTCCGG AGATCATTTCTCACTTTGGGATGCATGGAACAAGTGTTGCAGAGATAGTCAAGCATCTAATCACTGTCATAAAGAAAAATGATGATTTTCCAAACATTTT CATAGAAGCATTGAAAAGGGCTTATGATCGGCATCTAGTGGATCTTTCCAAAAGTGATGACAAATCTTTCACTAGCAAATCTTTTCTAGAGTGCAAGGAT CTTGCTACTAGACTTTCTGGGACATTCATGGGTGCTGCTCGGAACAAGCATAAATCTGATATTCTAAAAATTGTCAGGGATGGTATTGAATATGCTTTCT TAGATGCTCCAAAACAGCTCTCTTTTCTGGAAGGTACCGTGGTTCACTTTGTGCCCAAGCTTCCCGTGATTGACACCCTGGAAATTCTAAAGGATGTCCA AAGCCGGACAGAGAATGTAAACACCGATGAAGATCCCAGTGGCTGGCGCCCTTACCACACGTTTGTTGACAGTTTACGAGAGAAGTATGTGAAGAATGAA GGTTTGCCAGATGAGAAAGAGAGGAGACGCAGTGGTCGTCCAAGGAAGCGGCGTAATATAGAGGGAAAGAGATTGTTTGATGAGGAAAGTTCAAGTGAAG AAGAGGATTCAATTAGTGGATCAGATCGAGAAGATGCTCATGATGAAGAAGAGAAACAGGAAGAGGAGGAAGAGGAAGAGGCTCCTTTGATACATTCGAT TAGGTCATCATCCAAGTTGAGGTCATTGAAACTTTCAAGAGATGAAAACAAAGGCCAGAGGAAAGGAGTTTCGGCTTCTAGAACATCAGGTTGTCTGCAA AAGGGAAAATAA
AA sequence Show only first row Show all	>Potri.014G151400.2 pacid=42763555 polypeptide=Potri.014G151400.2.p locus=Potri.014G151400 ID=Potri.014G151400.2.v4.1 annot-version=v4.1 MLKIRNEQKGLVWSPLIKGYDKILVLEEMMRKIFSGLFVHRYRDIDPNIRTSCIESLGVWVLSYPSLFLQDLYLKYLGWTLNDKNAGVRKASVHALQKLY DADDNVPTLGLFTERFSNRMIELADDSDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLHIDDPAEVRRAIGELVYDHLIAQKFNSPQSSSRGSDSGSSE VHLSRMLQILREFSAEPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIELTDDDATNLVRLLSASVRKAVGERIVPASDTRKQYYNKAQKEIFENNR RHITIAMMKNYPLLLRKFMADKAKVPSLVEIIVHMNLGKAKVPSLVEIIVHMNLGLYSLKRQENNFKNVLQLMKQAFLKHGDKEALRSCVKAIKFCSTES QGELKDYALNKLKNLEDELNDKLKSAMKEAADGDEYSLLVNLKRLYELQLSWSVPIESLYEDIVKVLHSFRNVDDEVVSFLLLNMYLHVAWTLQSIVNSE TVSEASLTSLLSKRNSLFEELEYFLGTPSEDKEGSKCGNQLACRVCIILAEAWCLFRKANFSSTKLEHLGYCPDTSVLQRFWKLCEQQLNISDETEDDDT KKEYIEETNRDAVMIASAKLVVSNAVPKEYLTPEIISHFGMHGTSVAEIVKHLITVIKKNDDFPNIFIEALKRAYDRHLVDLSKSDDKSFTSKSFLECKD LATRLSGTFMGAARNKHKSDILKIVRDGIEYAFLDAPKQLSFLEGTVVHFVPKLPVIDTLEILKDVQSRTENVNTDEDPSGWRPYHTFVDSLREKYVKNE GLPDEKERRRSGRPRKRRNIEGKRLFDEESSSEEEDSISGSDREDAHDEEEKQEEEEEEEAPLIHSIRSSSKLRSLKLSRDENKGQRKGVSASRTSGCLQ KGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Potri.014G151400 [exp]	0	1
AT1G17960			Threonyl-tRNA synthetase (.1)		Potri.010G096550 [exp]	7.41	0.8718
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.010G202300 [exp]	24.49	0.8913
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Potri.017G067400 [exp]	33.94	0.8578	SYN2.1
AT5G26980		ATSYP41, ATTLG2...	syntaxin of plants 41 (.1.2)		Potri.002G200400 [exp]	35.79	0.8338	SYP42.1
AT5G49580			Chaperone DnaJ-domain superfam...		Potri.008G101800 [exp]	36.33	0.8140
AT5G51030			NAD(P)-binding Rossmann-fold s...		Potri.015G108400 [exp]	40.21	0.8675
AT3G45900			Ribonuclease P protein subunit...		Potri.001G130100 [exp]	49.49	0.8070
AT4G02550			unknown protein		Potri.010G215600 [exp]	51.20	0.8577
AT1G08390			unknown protein		Potri.002G256001 [exp]	56.62	0.8006
AT3G23750			Leucine-rich repeat protein ki...		Potri.005G049200 [exp]	59.63	0.8526

Compare expression of checked genes

Potri.014G151400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.