Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59300 524 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G24060 173 / 1e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) AT3G49140 120 / 2e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G230700 [exp] 779 / 0 AT3G59300 542 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G148600 [exp] 189 / 2e-54 AT3G49140 256 / 1e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G072400 [exp] 181 / 3e-51 AT5G24060 377 / 1e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027532 [exp] 177 / 9e-50 AT5G24060 402 / 4e-136 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10039291 [exp] 173 / 3e-48 AT5G24060 400 / 1e-135 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10014952 [exp] 152 / 3e-41 AT5G24060 324 / 2e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10038836 [exp] 140 / 5e-37 AT3G49140 275 / 5e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G151700.4 pacid=42763775 polypeptide=Potri.014G151700.4.p locus=Potri.014G151700 ID=Potri.014G151700.4.v4.1 annot-version=v4.1 ATGGTGATCGCTGCAGCAGCTGCAGCTGCTTCCTCGCTCCCCCTCGGTGCTTCCCATTGTCAACTAAGCCAGGCAGATAGAATTTGCTGCTCAACACCAT ACGGGTTCACAAATGGTTGGATCAAATCTCCTATTAATAGTTGTAGATCTTGTGACCTTTCCAGCATAAGGTACAGAAATCCATTTTTTGGATCAACACA GTTTCAATGGTCATCTGTGGACCGTGAACTTTGCCTTTTGAAAGTTTCAGTTGCTGCTGATTACTCTGATTCAGTTCCTGATTCATCTAATTACACAAGT CATCAAGGTTATCATCCACTAGAAGAAGTGAAAATCAGCAAAAGGACACGTGAAACTCAGCTCACCTCTGCTGAAATAGCAAGGACAACTGTTGAGGCTA ACACCAGTGCTTTGCTGGTCTTTCCTGGATCTGTGCACTGTGAACCACACAAACAAATTTCCTGGACTGAATTTCAGTATATCATTGATGAATATGGAGA TATATTCTTTGAAATTTTTGATGATAAAAATATCTTACAAGATCGAGGAGCTAGCAACCTTGTGAATGTTTTGATCGGGATGGATATCCCAATCTATGAA AATAAAAAGGTAGCCAATGAATACAGTATTTTCAACATTGGCAGTGAAGATGATTTACCATTCGACGAGGATTACTTTGAGGCAATGGATTCTGAAGTTT CAGTTGATTGGGGAATGCCAGATACTTTCAGCTTGGTTCATCCTATTTATTTTTCCAAGTGCATGACAAAGGCAATCAATATGGAATACTGTAGAAAAAT GGACCATCCATCAAATGGTGTTTCTATTGTGGGTTGTCTGCGGCCATCTTTTGCTGATGAAGAATCATACTTAAGAAGGTCATTTCACTGTGAAGATAGT GATGGCTGTAATTCAGACTGGAAAGATGGAGAAATTTTGAGCTTTAGCTCCAAAAGCGATGGAAGCAGCTCTGGCTCAACTCTCCACCGTTTGGAGATCT TGAGAATAGAGCTATTTTCGTTGTATGGGTCTCAGTCTGTGGTTAGTTTACAAGATTTTCAAGATGCAGAGCCTGATGTCCTTGCTCCCTCTACTTCAGC AATTCTAGAGCACTTCAGCGGGAAGGGAAGTAGATGCAATGTTGCTCTTAAAGCTCTTTGTAAGAAGAAGGGTCTTCATGTTGAGGCAGCTAATTTGGTT GGGATTGATAGCCTTGGCATGGATGTTAGAATTTTCTGTGGGGTGGAAGCACGAACTCATCGATTCCCCTTCAAAGTCCGGGCTACCTGTGAAGTTGCTG CACAAAAGCAGATGCATCAGCTGTTGTTCCCTCGGTCTCGCCGAAAAAAGTTTAGAAGTCACGAAGATGAGCTTGGGGACTCCAAGTCATAG
AA sequence Show only first row Show all	>Potri.014G151700.4 pacid=42763775 polypeptide=Potri.014G151700.4.p locus=Potri.014G151700 ID=Potri.014G151700.4.v4.1 annot-version=v4.1 MVIAAAAAAASSLPLGASHCQLSQADRICCSTPYGFTNGWIKSPINSCRSCDLSSIRYRNPFFGSTQFQWSSVDRELCLLKVSVAADYSDSVPDSSNYTS HQGYHPLEEVKISKRTRETQLTSAEIARTTVEANTSALLVFPGSVHCEPHKQISWTEFQYIIDEYGDIFFEIFDDKNILQDRGASNLVNVLIGMDIPIYE NKKVANEYSIFNIGSEDDLPFDEDYFEAMDSEVSVDWGMPDTFSLVHPIYFSKCMTKAINMEYCRKMDHPSNGVSIVGCLRPSFADEESYLRRSFHCEDS DGCNSDWKDGEILSFSSKSDGSSSGSTLHRLEILRIELFSLYGSQSVVSLQDFQDAEPDVLAPSTSAILEHFSGKGSRCNVALKALCKKKGLHVEAANLV GIDSLGMDVRIFCGVEARTHRFPFKVRATCEVAAQKQMHQLLFPRSRRKKFRSHEDELGDSKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59300			Pentatricopeptide repeat (PPR)...		Potri.014G151700 [exp]	0	1
AT5G57700			BNR/Asp-box repeat family prot...		Potri.006G175161 [exp]	1.73	0.9161
AT4G25330			unknown protein		Potri.002G216900 [exp]	2.82	0.8717
AT4G15563			unknown protein		Potri.008G204800 [exp]	3.00	0.8796
AT1G49760		PABP8, PAB8	poly(A) binding protein 8 (.1)...		Potri.002G124200 [exp]	4.47	0.8555
AT5G45920			SGNH hydrolase-type esterase s...		Potri.011G063800 [exp]	4.89	0.8560
AT5G15270			RNA-binding KH domain-containi...		Potri.004G123400 [exp]	6.48	0.8607
AT1G29810			Transcriptional coactivator/pt...		Potri.011G078900 [exp]	8.24	0.8378
AT4G03020			transducin family protein / WD...		Potri.008G197200 [exp]	8.48	0.8483
AT2G20360			NAD(P)-binding Rossmann-fold s...		Potri.014G193300 [exp]	8.71	0.8362
AT3G42050			vacuolar ATP synthase subunit ...		Potri.019G047800 [exp]	9.38	0.8538

Compare expression of checked genes

Potri.014G151700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.