Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59310 416 / 7e-146 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) AT3G59340 406 / 6e-142 Eukaryotic protein of unknown function (DUF914) (.1) AT3G59320 370 / 1e-127 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) AT3G59330 247 / 1e-80 Eukaryotic protein of unknown function (DUF914) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G230600 [exp] 624 / 0 AT3G59310 436 / 8e-154 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Potri.003G030800 [exp] 261 / 1e-84 AT3G59310 265 / 7e-87 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026744 [exp] 467 / 1e-165 AT3G59310 451 / 4e-160 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10025530 [exp] 456 / 1e-160 AT3G59310 432 / 7e-152 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10004060 [exp] 274 / 5e-90 AT3G59310 305 / 5e-103 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10003247 [exp] 223 / 6e-70 AT3G59310 256 / 1e-83 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10002279 [exp] 100 / 5e-24 AT3G59330 111 / 2e-28 Eukaryotic protein of unknown function (DUF914) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF06027 [poplar] [flax] SLC35F Solute carrier family 35
Representative CDS sequence Show only first row Show all	>Potri.014G151800.4 pacid=42763071 polypeptide=Potri.014G151800.4.p locus=Potri.014G151800 ID=Potri.014G151800.4.v4.1 annot-version=v4.1 ATGTTGAGCTTTAAGGAGTTTTGTACAACGAAAACGTTGGTTGCTCTAGGGTTGGGACAGTTTCTCTCTCTCCTTATTACTTCTACTGGATTTTCATCCT CTGAACTTGCTAGAAGAGGAATTAATGCACCGACTTCTCAGTCTTTTCTCAACTACGTTTTCTTGGCCATTGTTTATGGAAGTATTATGCTTTACCGGAA GCAAGCACTTAAGGCAAAATGGTACTACTATGCGATTCTTTCATTGGTGGATGTAGAAGCCAATTTTCTTGCAGTGGTGAAGGCCTATCAGTACACATCG ATCACAAGTGTCATGCTGCTGGACTGTTGGTCAATCCCTTGTGTTATGGTTCTTACATGGTTTTTCTTGAGCACAAAGTACAGATTCAAGAAAATAGCTG GAGTAGTAGTTTGTGTTGCAGGCCTTGTTATGGTTGTTTTTTCAGATGTTCATGCTGGTGATCAATCAGGAGGGAGCAACCCTCGTAAAGGAGATGCTCT TGTTATTGCTGGTGCAACGCTGTATGCTATCAGTAATGTCAGTGAGGAGTTTCTTGTGAAAAATGCTGATAGAGTTGAGCTCATGTCGCTTCTGGGCTTT TTTGGTGCCATAATCAGTGCCATTCAAATAAGTATTCTGGAGCGCAACGAAGTTAAATCTATTCACTGGTCAGCTGGGGCAGCTCTTCCGTTCTTTGGAT TTGCAGTCGCAATGTTCCTGTTCTACTCATTAGTCCCGATCCTGCTTAAGATTAGTGGTTCCACAATGCTCAACTTGTCTTTGCTGACATCAGACATGTG GGCTGTCATGATTCGCATCTTTGCTTACCATGAGAAGGTTGATTGGATGTACTTTTTGGCCTTCGCTGCTGTTGCTGTTGGGCTGGTTGTTTATTCGGGG GGTGACAAGGAAGAGGATCAACACTGTGCTTATGTTGTTGATGAAGACGCTGAGCGTAGCAGTAAACATTTTGATGAGGAGGCTTGTTCTGGAAACCGCA GTCAAAAAACTATACTTGGGAGCTCAAAAACCGGGGATAGTAGCAAGCGTGATCTTGCTAGCACCGGCATTGGAGATGGGCAAGACATTGAGAACAAGAA TGTGGGAAAAGATGTATGGGGGAAGAAATCATAG
AA sequence Show only first row Show all	>Potri.014G151800.4 pacid=42763071 polypeptide=Potri.014G151800.4.p locus=Potri.014G151800 ID=Potri.014G151800.4.v4.1 annot-version=v4.1 MLSFKEFCTTKTLVALGLGQFLSLLITSTGFSSSELARRGINAPTSQSFLNYVFLAIVYGSIMLYRKQALKAKWYYYAILSLVDVEANFLAVVKAYQYTS ITSVMLLDCWSIPCVMVLTWFFLSTKYRFKKIAGVVVCVAGLVMVVFSDVHAGDQSGGSNPRKGDALVIAGATLYAISNVSEEFLVKNADRVELMSLLGF FGAIISAIQISILERNEVKSIHWSAGAALPFFGFAVAMFLFYSLVPILLKISGSTMLNLSLLTSDMWAVMIRIFAYHEKVDWMYFLAFAAVAVGLVVYSG GDKEEDQHCAYVVDEDAERSSKHFDEEACSGNRSQKTILGSSKTGDSSKRDLASTGIGDGQDIENKNVGKDVWGKKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59310			Eukaryotic protein of unknown ...		Potri.014G151800 [exp]	0	1
AT2G02960			RING/FYVE/PHD zinc finger supe...		Potri.013G126600 [exp]	1.00	0.7062
AT4G02680		EOL1	ETO1-like 1 (.1)		Potri.005G214400 [exp]	10.00	0.7044
AT1G02630			Nucleoside transporter family ...		Potri.018G130000 [exp]	12.96	0.6990
AT5G22860			Serine carboxypeptidase S28 fa...		Potri.018G018500 [exp]	15.16	0.6161
AT5G62065			Bifunctional inhibitor/lipid-t...		Potri.015G142100 [exp]	16.61	0.6630
					Potri.003G056450 [exp]	19.39	0.6473
AT1G02630			Nucleoside transporter family ...		Potri.018G130200 [exp]	22.58	0.6516
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Potri.011G011101 [exp]	23.23	0.6304
AT5G24320			Transducin/WD40 repeat-like su...		Potri.015G009700 [exp]	27.11	0.5563
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Potri.017G099700 [exp]	27.12	0.5686

Compare expression of checked genes

Potri.014G151800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.