Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21700 315 / 2e-108 ATSGP2 Ras-related small GTP-binding family protein (.1.2.3) AT5G54840 271 / 4e-91 ATSGP1 Ras-related small GTP-binding family protein (.1.2) AT2G44610 75 / 5e-16 RAB6, AtRABH1b, AtRab6A Ras-related small GTP-binding family protein (.1) AT5G45130 73 / 2e-15 ATRAB-F2A, RHA1, AtRab5A, AtRABF2a ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) AT4G19640 73 / 3e-15 ATRAB-F2B, ARA7, Ara-7, AtRABF2b, AtRab5B ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) AT5G59150 69 / 7e-14 ATRAB-A2D, AtRABA2d ARABIDOPSIS RAB GTPASE HOMOLOG A2D, RAB GTPase homolog A2D (.1) AT1G07410 68 / 1e-13 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT4G18430 68 / 2e-13 AtRABA1e RAB GTPase homolog A1E (.1) AT4G39890 68 / 2e-13 AtRABH1c RAB GTPase homolog H1C (.1) AT5G60860 68 / 2e-13 AtRABA1f RAB GTPase homolog A1F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G136300 [exp] 318 / 7e-110 AT5G54840 370 / 5e-130 Ras-related small GTP-binding family protein (.1.2) Potri.001G420700 [exp] 317 / 2e-109 AT5G54840 363 / 2e-127 Ras-related small GTP-binding family protein (.1.2) Potri.002G135500 [exp] 74 / 6e-16 AT2G44610 385 / 3e-138 Ras-related small GTP-binding family protein (.1) Potri.003G086700 [exp] 74 / 8e-16 AT2G44610 397 / 4e-143 Ras-related small GTP-binding family protein (.1) Potri.014G102200 [exp] 71 / 2e-14 AT1G01200 332 / 2e-116 ARABIDOPSIS RAB GTPASE HOMOLOG A3, RAB GTPase homolog A3 (.1) Potri.013G123600 [exp] 71 / 2e-14 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.007G096000 [exp] 70 / 4e-14 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1) Potri.001G374000 [exp] 69 / 6e-14 AT5G60860 417 / 1e-150 RAB GTPase homolog A1F (.1) Potri.002G175700 [exp] 69 / 1e-13 AT1G01200 333 / 4e-117 ARABIDOPSIS RAB GTPASE HOMOLOG A3, RAB GTPase homolog A3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039670 [exp] 362 / 7e-127 AT3G21700 325 / 3e-112 Ras-related small GTP-binding family protein (.1.2.3) Lus10031559 [exp] 357 / 5e-125 AT3G21700 340 / 5e-118 Ras-related small GTP-binding family protein (.1.2.3) Lus10015119 [exp] 351 / 9e-123 AT3G21700 335 / 7e-116 Ras-related small GTP-binding family protein (.1.2.3) Lus10027172 [exp] 340 / 2e-118 AT3G21700 313 / 2e-107 Ras-related small GTP-binding family protein (.1.2.3) Lus10040044 [exp] 291 / 8e-99 AT5G54840 331 / 1e-114 Ras-related small GTP-binding family protein (.1.2) Lus10019615 [exp] 290 / 2e-98 AT5G54840 330 / 6e-114 Ras-related small GTP-binding family protein (.1.2) Lus10040423 [exp] 78 / 5e-17 AT5G03530 278 / 1e-95 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10019501 [exp] 72 / 4e-15 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10043349 [exp] 72 / 4e-15 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10038334 [exp] 71 / 1e-14 AT5G45130 349 / 3e-124 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00071 [poplar] [flax] Ras Ras family
Representative CDS sequence Show only first row Show all	>Potri.014G152100.1 pacid=42762400 polypeptide=Potri.014G152100.1.p locus=Potri.014G152100 ID=Potri.014G152100.1.v4.1 annot-version=v4.1 ATGAATCAATTTTGCCAAATTATGTTTCGATTCAATCCCAGACGAAAGATTCAACGCCACATTTCAATCATTAGACGATGCATTCTCCGTATATGGGATC ACGTTCTCATTTGTTCATTAGGGAAGCCTGTTCGCTATCGCCGCATGCTGTCACACCGGTCTCTAGCTACCGACGAGACAATGCCGAGCGCAACACCACC ACCGATATGTCATAACCATCACGATAATGATTCAGACTTGGTAGCTTTAAAGATTAGCCTCTTAGGTGATTGTCAGATTGGAAAGACAAGTTTTCTGGCA AAGTATGTGGGAAATGAGAAAGATGAGGGAGTGAAGCATAACAACGGTTTGAAATTGATGAAAAAAACATTGATGGTTAAGGATGCACGTATTTCTTATA GTCTCTGGGAACTAGACGGCGATGAAGGATTGGAGCAGCAAATTCCGGTGGCTTGCAAGGGATCTGTGGCTATTTTGATCATGTTTGATCTAACTAGTCG GGTCACTTTAAACAGTGTTATAAGGTGGTACCAAGAAGCAAGGAGATGGAATCAGACCGCAGTTCCTGTTATAATAGGAACCAAGTTTGATGATTTTATC CAGCTCCCGATAGATCTACAATGGACAATTGCAAGCCAGGCAAGAGCATATGCCAAGGTTCTAAATGCAACTCTCTTCTTTTCAAGTGCGACCTATAACA TCAATGTGAATAAGATTTTCAAATTCATCACAGCAAAGCTCTTTGACCTGCCCTGGACCTTGGAGCGCAATCTCACCATTGGAGAACCTATTATTGATTT CTAA
AA sequence Show only first row Show all	>Potri.014G152100.1 pacid=42762400 polypeptide=Potri.014G152100.1.p locus=Potri.014G152100 ID=Potri.014G152100.1.v4.1 annot-version=v4.1 MNQFCQIMFRFNPRRKIQRHISIIRRCILRIWDHVLICSLGKPVRYRRMLSHRSLATDETMPSATPPPICHNHHDNDSDLVALKISLLGDCQIGKTSFLA KYVGNEKDEGVKHNNGLKLMKKTLMVKDARISYSLWELDGDEGLEQQIPVACKGSVAILIMFDLTSRVTLNSVIRWYQEARRWNQTAVPVIIGTKFDDFI QLPIDLQWTIASQARAYAKVLNATLFFSSATYNINVNKIFKFITAKLFDLPWTLERNLTIGEPIIDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Potri.014G152100 [exp]	0	1
AT3G03480		CHAT	acetyl CoA:(Z)-3-hexen-1-ol ac...		Potri.001G447900 [exp]	4.00	0.9276
AT5G61820			unknown protein		Potri.015G108700 [exp]	7.74	0.8767
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447700 [exp]	10.53	0.9369
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Potri.002G184500 [exp]	21.97	0.9188
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447766 [exp]	24.81	0.9161
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Potri.018G033200 [exp]	31.85	0.9014
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Potri.001G470700 [exp]	39.49	0.8934	Pt-PETF.2
					Potri.019G075301 [exp]	40.98	0.8787
AT2G17080			Arabidopsis protein of unknown...		Potri.005G249000 [exp]	42.34	0.8757
AT3G60510			ATP-dependent caseinolytic (Cl...		Potri.001G156900 [exp]	43.90	0.8785

Compare expression of checked genes

Potri.014G152100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.