Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02205 791 / 0 CER1 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) AT1G02190 737 / 0 Fatty acid hydroxylase superfamily (.1.2) AT2G37700 730 / 0 Fatty acid hydroxylase superfamily (.1.2) AT5G57800 341 / 6e-109 CER3, FLP1, YRE, WAX2 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G152600 [exp] 1222 / 0 AT1G02205 788 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Potri.014G152900 [exp] 1194 / 0 AT1G02205 789 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Potri.014G180300 [exp] 1103 / 0 AT1G02205 793 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Potri.006G177500 [exp] 353 / 2e-113 AT5G57800 890 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Potri.018G099400 [exp] 346 / 9e-111 AT5G57800 851 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019510 [exp] 852 / 0 AT1G02205 763 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10008895 [exp] 347 / 3e-111 AT5G57800 885 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10023210 [exp] 339 / 4e-108 AT5G57800 882 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10019971 [exp] 330 / 1e-104 AT5G57800 879 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10015499 [exp] 329 / 2e-104 AT5G57800 877 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10011473 [exp] 288 / 9e-93 AT1G02205 310 / 7e-102 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10011472 [exp] 272 / 2e-86 AT1G02205 303 / 5e-99 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10023110 [exp] 233 / 3e-70 AT1G02205 261 / 6e-81 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10023109 [exp] 87 / 2e-20 AT1G02205 87 / 3e-21 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [poplar] [flax] FA_hydroxylase Fatty acid hydroxylase superfamily PF12076 [poplar] [flax] Wax2_C WAX2 C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.014G152301.1 pacid=42762667 polypeptide=Potri.014G152301.1.p locus=Potri.014G152301 ID=Potri.014G152301.1.v4.1 annot-version=v4.1 ATGGCTTCTCGGCCTGGAATTCTCACAGACTGGCCATGGAAACCTCTTGGAAGCTTTAAGCATGTAATATTGGCTCCTTGTGTCATTCACAACATCTACG CCTTTATGGTTAAAGATGAAAAAGATCTCCCAAGCTTTCTCATTTTCCCAATTCTGTTGTGGAGAGTTCTTCACAACCAGTTATGGATCAGCCTGTCCCG TTACAGAACAGCCAAAGGAAATAACAGGATTATTGACAAAGGCATTGAATTTGATCAAGTTGATAGAGAAAGCAACTGGGATGACCAAATATTGTTCAAT GGAATTTTATTCTACGTTGGTAGCAAAATAATTCCAGGAGCTAGCCATCTCCCCATGTGGAGGTTAGATGGTGTAATTCTAACAGCTCTGATTCATATGG GTCCGGTGGAATTTCTGTATTATTGGCTTCATCGACTTCTTCATCACCACTATCTCTACTCTCGCTATCATTCCCACCACCATTCCTCCATTGTCACAGA GCCCATTACTTCTGTGATTCATCCATTCGCCGAGCACATATCCTACTCCATGCTATTCGCAATACCTTTGATAACGACTATTGTGACGGGGACAGCCTCT TTAACATCCTTTGCTGGTTATATCACTTACATCGACTTGATGAACAACATGGGTCACTGCAACTTTGAACTCATTCCCAGATGGCTCTTCATCATTTTCC CCCCTCTCAAGTACCTCATGTACACCCCATCGTACCACTCTCTTCACCACACTCAATTCAGAACCAATTACTCACTATTCATGCCCATCTATGATTACAT CTATGGCACAATGGACACGTCTTCTGTTACCCTCTATGAAGATTCGCTCAAGAGACCCGAGGAAGCCCCTGATGTAGTGCATCTAACTCATCTTACCACA CCAGATTCCATCTATCATTTACGGCTTGGACTTGCCTGCTTGGCTTCCAACCCTCAAGAATCGAAGTGGTATCTATGGTTAATGTGGCCGGTGACCTTGT GGACCATGATGTTAACTTGGACTTATGGACGCACTTTTGTTGTCGAGAGGAATCGCTTCCACAAACTCAGATTACAGACGTGGACCTTACCAAAATACAA TATTCAATACAACTTGCAATGGCAAAAAGTATCCATAAATACCTTGATTGAAGAAGCTGTACTGGAAGCTGAGGAAAAAGGTGTTAAAGTGTTAAGTCTC GGTCTCTTGAATCAGGGAGAGGAGCTTAATAGGTATGGTGAACTTTATGTGCAAAGACATCCCAGGCTCAAAACGAAGGTGGTGGATGGAAGCAGTCTAG CCGTTGCTGCAGTTATGAATAGCATACCTAAAGGAACAACACAAGTGCTTCATAGAGGCAATCTCTCTAAGGTTGCCTATGCTGTTGCTTTAAATCTCTG CCAGAGGGGAATCCAGGTAGTTGTACCATGTGAGGATGATTACCAGAAGCTTAAAAAATCTTTCAGCATCACATCTGATCAGAACAATCTGATTCTTTCA AAGAGTTATTCAATAAAGACGTGGTTAGTTGGGGATGGATTGAAAGAAGAGGACCAAAAAAAGGCAGCAGAAGGAACATTATTTATTCCCTTCTCGCAAT TTCCCCCAAAGAAATTGCGCAAGGATTGCTTCTATCACAGCATACCAGTAATGGCAGCCCCTGCATCTCTTGAAAATGTGGACTCTTGCGAGAATTGGCT GCCTAGAAGAGTGATGAGCGCATGGCGTGTGGCTGGAATAGTGCATGCCTTGGAAGGATGGGACGAGCATGAATGCGGTTCTACCATGGCTGACATTGAC AAAGTTTGGCAAGCAAGTATCCAACATGGGTTCAAACCTCTGGTCATCAAGACTCCATTAAAATTCTAA
AA sequence Show only first row Show all	>Potri.014G152301.1 pacid=42762667 polypeptide=Potri.014G152301.1.p locus=Potri.014G152301 ID=Potri.014G152301.1.v4.1 annot-version=v4.1 MASRPGILTDWPWKPLGSFKHVILAPCVIHNIYAFMVKDEKDLPSFLIFPILLWRVLHNQLWISLSRYRTAKGNNRIIDKGIEFDQVDRESNWDDQILFN GILFYVGSKIIPGASHLPMWRLDGVILTALIHMGPVEFLYYWLHRLLHHHYLYSRYHSHHHSSIVTEPITSVIHPFAEHISYSMLFAIPLITTIVTGTAS LTSFAGYITYIDLMNNMGHCNFELIPRWLFIIFPPLKYLMYTPSYHSLHHTQFRTNYSLFMPIYDYIYGTMDTSSVTLYEDSLKRPEEAPDVVHLTHLTT PDSIYHLRLGLACLASNPQESKWYLWLMWPVTLWTMMLTWTYGRTFVVERNRFHKLRLQTWTLPKYNIQYNLQWQKVSINTLIEEAVLEAEEKGVKVLSL GLLNQGEELNRYGELYVQRHPRLKTKVVDGSSLAVAAVMNSIPKGTTQVLHRGNLSKVAYAVALNLCQRGIQVVVPCEDDYQKLKKSFSITSDQNNLILS KSYSIKTWLVGDGLKEEDQKKAAEGTLFIPFSQFPPKKLRKDCFYHSIPVMAAPASLENVDSCENWLPRRVMSAWRVAGIVHALEGWDEHECGSTMADID KVWQASIQHGFKPLVIKTPLKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Potri.014G152301 [exp]	0	1
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Potri.014G152600 [exp]	2.00	0.9964
AT3G62820			Plant invertase/pectin methyle...		Potri.014G129400 [exp]	2.44	0.9772
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Potri.001G251100 [exp]	3.31	0.9579
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Potri.011G025300 [exp]	3.87	0.9652
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125151 [exp]	4.00	0.9676
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.006G009800 [exp]	4.69	0.9503
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Potri.019G103500 [exp]	6.16	0.9541	DFL2.1,GH3-11
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Potri.006G067800 [exp]	9.00	0.9606
AT1G78270		ATUGT85A4	UDP-glucosyl transferase 85A4 ...		Potri.016G020201 [exp]	9.38	0.9606
					Potri.001G188400 [exp]	9.53	0.9569

Compare expression of checked genes

Potri.014G152301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.