Plant FIBer expression Database

Potri.014G153000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G05190 323 / 2e-113 EMB2394 embryo defective 2394, Ribosomal protein L6 family (.1)
AT2G18400 86 / 8e-22 ribosomal protein L6 family protein (.1)
AT1G33140 40 / 0.0003 PGY2 PIGGYBACK2, Ribosomal protein L6 family (.1)
AT1G33120 40 / 0.0003 Ribosomal protein L6 family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G229325
[exp]
315 / 2e-110 AT1G05190 272 / 2e-93 embryo defective 2394, Ribosomal protein L6 family (.1)
Potri.002G229350
[exp]
153 / 7e-48 AT1G05190 138 / 3e-42 embryo defective 2394, Ribosomal protein L6 family (.1)
Potri.007G024900
[exp]
84 / 1e-20 AT2G18400 173 / 6e-58 ribosomal protein L6 family protein (.1)
Potri.001G454101
[exp]
45 / 1e-05 AT1G33140 331 / 1e-117 PIGGYBACK2, Ribosomal protein L6 family (.1)
Potri.001G453900
[exp]
45 / 1e-05 AT1G33140 331 / 1e-117 PIGGYBACK2, Ribosomal protein L6 family (.1)
Potri.001G454000
[exp]
44 / 2e-05 AT1G33140 331 / 2e-117 PIGGYBACK2, Ribosomal protein L6 family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029120
[exp]
306 / 3e-106 AT1G05190 312 / 5e-109 embryo defective 2394, Ribosomal protein L6 family (.1)
Lus10013041
[exp]
305 / 2e-105 AT1G05190 310 / 3e-107 embryo defective 2394, Ribosomal protein L6 family (.1)
Lus10014306
[exp]
82 / 4e-20 AT2G18400 179 / 4e-60 ribosomal protein L6 family protein (.1)
Lus10026015
[exp]
82 / 2e-19 AT2G18400 181 / 1e-59 ribosomal protein L6 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00347 Ribosomal_L6 Ribosomal protein L6
Representative CDS sequence
>Potri.014G153000.1 pacid=42762792 polypeptide=Potri.014G153000.1.p locus=Potri.014G153000 ID=Potri.014G153000.1.v4.1 annot-version=v4.1
ATGGCTTCTTCTTCAATCACCTCTTCTTTTCAGACCAGCAATTTGAGATCTGTATTCTTGGGTGAAAGAAACAGAATTTGTGTACCTAGTGTTCCTGTAA
CTCGCATTGGTTTTTTGAGAAAGGCTATTGAATGTAAGGAGTCACGGATAGGGAAGCAACCAATTCAAGTTCCATCCAATGTGACAATCAAATTGGAAGG
TCAGGATTTGAAAGTAAAGGGTCCATTGGGGGAACTTTCAAGGACTTACCCACGAGAAGTGAAGCTTGAGAGGGACGAGGATGGAATCATTCGGGTGAAA
AAGGCACTAGAAACTAGAAGAGCGAACCAAATGCATGGTCTTTTCAGAACACTTACGGACAACATGGTGGTGGGAGTATCTAAGGGTTTCGAGAAGAGAC
TTCAACTAGTTGGTGTTGGTTATCGTGCAAATGTAGAAGGAAAAGACTTGGTATTAAGTCTGGGGTTCTCTCATCCAGTTAGGATGGCAATCCCTGCTAC
CCTACAAGTGAAGGTGGAAGAGAACACCAGGATCGTTGTCAGTGGATTTGACAAATGCTCCATTGGTGAGTTTGCTGCTTCAATTAGGAGATGGAGACCC
CCTGAACCATATAAAGGTAAGGGTGTGAGGTATGCCAATGAAATTATAAGATTAAAGGAGGGGAAAGCAGGGAAGAAGAAGTGA
AA sequence
>Potri.014G153000.1 pacid=42762792 polypeptide=Potri.014G153000.1.p locus=Potri.014G153000 ID=Potri.014G153000.1.v4.1 annot-version=v4.1
MASSSITSSFQTSNLRSVFLGERNRICVPSVPVTRIGFLRKAIECKESRIGKQPIQVPSNVTIKLEGQDLKVKGPLGELSRTYPREVKLERDEDGIIRVK
KALETRRANQMHGLFRTLTDNMVVGVSKGFEKRLQLVGVGYRANVEGKDLVLSLGFSHPVRMAIPATLQVKVEENTRIVVSGFDKCSIGEFAASIRRWRP
PEPYKGKGVRYANEIIRLKEGKAGKKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G05190 EMB2394 embryo defective 2394, Ribosom... Potri.014G153000
[exp]
0 1
AT3G27830 RPL12-A ribosomal protein L12-A (.1) Potri.001G346100
[exp]
1.73 0.9915 Pt-RPL12.6
AT1G54500 Rubredoxin-like superfamily pr... Potri.013G035700
[exp]
2.00 0.9887
AT1G79850 PDE347, CS17, P... PLASTID RIBOSOMAL SMALL SUBUNI... Potri.001G184000
[exp]
3.87 0.9873
ATCG00900 ATCG00900.1, RP... CHLOROPLAST RIBOSOMAL PROTEIN ... Potri.004G140500
[exp]
5.29 0.9868
AT5G54600 Translation protein SH3-like f... Potri.001G415400
[exp]
6.48 0.9851
AT3G52150 RNA-binding (RRM/RBD/RNP motif... Potri.009G065900
[exp]
6.70 0.9859
AT1G14345 NAD(P)-linked oxidoreductase s... Potri.010G093300
[exp]
9.38 0.9808
AT1G74970 TWN3, RPS9 ribosomal protein S9 (.1) Potri.002G132200
[exp]
9.53 0.9814 Pt-RPS9.2
AT3G12345 unknown protein Potri.008G047800
[exp]
10.48 0.9785
AT1G64510 Translation elongation factor... Potri.001G088300
[exp]
10.81 0.9804

Potri.014G153000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.