Plant FIBer expression Database

Potri.014G154000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G32480 549 / 0 ARASP ARABIDOPSIS SERIN PROTEASE (.1.2)
AT1G05140 513 / 0 Peptidase M50 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G228600
[exp]
682 / 0 AT2G32480 564 / 0.0 ARABIDOPSIS SERIN PROTEASE (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035276
[exp]
198 / 6e-62 AT1G05140 232 / 1e-75 Peptidase M50 family protein (.1)
Lus10027190
[exp]
195 / 4e-61 AT1G05140 233 / 2e-76 Peptidase M50 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0466 PDZ-like PF00595 PDZ PDZ domain
CL0126 Peptidase_MA PF02163 Peptidase_M50 Peptidase family M50
Representative CDS sequence
>Potri.014G154000.1 pacid=42764493 polypeptide=Potri.014G154000.1.p locus=Potri.014G154000 ID=Potri.014G154000.1.v4.1 annot-version=v4.1
ATGCTCATAAACTTCTCTTCCTCTCCTCTACCCCCTTCATCTTCTCTTCCAAGATTTTCCAACTCGAAGTCACCCGTTTTAGAACCACCCTCTTTAAAAT
CCAAAACCAACTTTCTTAAACCTCTTCCCTCTTCACCTTGCTATTCATCAAACCTTAGTTTTCACCCCAAGACTCACCTTTTCAGTAGATGCCCACATGG
GAAAAGGTTGGACTTAAGGTCATGCGCTGTTTCTGGATTTGACTTGGGGAACTTTGAGTCTGTTTTAGAGGCAGCTGGAGTGTTGACAGCCATTATTGTT
GTTCATGAAAGTGGTCACTTTCTTGCTGCTTATCTACAGGGTATCCATGTAAGTAAATTTGCTGTTGGGTTTGGTCCAGTTTTAGCTAAATTTAGTGCAA
AAAACGTTGAATACTCATTAAGAGCTTTTCCTCTGGGTGGGTTTGTGGGGTTTCCTGATAATGATCCAGAGAGTGATATACCTGTAGATGATGAGAATTT
GCTTAAGAACAGACCGATATTGGATAGAACGATAGTGATATCAGCTGGTGTTATTGCTAATATTATCTTTGCTTATGCCATAATCTTTGTTCAAGTATTA
TCAGTTGGTTTGCCTGTGCAAGAGGCCTTTCCTGGGGTGCTTGTTCCAGAAGTTCGAGCCTTTTCCGCTGCTTCCCGAGATGGGTTGCTTCCCGGGGATG
TAATTCTTGCTGTTAATGGAACTAACTTGCCTAAAATTGGGCCAAATGCGGTTTCCGAGGTTGTTGGTGTCATCAAGAGTAGTCCTAAAAAGAATGTGTT
GCTTAAGGTTGGGAGGGGAAAACAGGATTTTGAGATTGGCGTCACCCCGGATGAGAGTTTTGATGGAACAGGTAAAATTGGAGTTCAATTATCACCCAAT
GTAAAGATTACCAAGGTTGTAGCCAAAAACATCTTGGAGGCATTTAATTTTGCTGGAAAAGAATTTTTGGGTCTTTCATCCAATGTGGTGGATAGCTTGA
AACAAACTTTTTTAAACTTCTCTCAATCAGCTAGTAAGGTTTCTGGTCCGGTTGCTATTATTGCTGTTGGTGCAGAAGTTGCAAGGTCGAATATTGATGG
ACTTTACCAATTTGCAGCGGTGCTCAATATTAATCTTGCAGTGATAAATCTCCTTCCATTACCTGCTTTGGATGGGGGTTCCTTGGCCTTCATTCTCATA
GAAGCAGCGAGGGGTGGGAGAAAGCTCCCTTTAGAAATAGAGCAGCGGATAATGTCATCCGGGATCATGCTTGTTATTCTCCTTGGACTATTTCTTATTG
TTCGGGACACCCTAAACCTTGATTTCATCAAAGATATGTTGTGA
AA sequence
>Potri.014G154000.1 pacid=42764493 polypeptide=Potri.014G154000.1.p locus=Potri.014G154000 ID=Potri.014G154000.1.v4.1 annot-version=v4.1
MLINFSSSPLPPSSSLPRFSNSKSPVLEPPSLKSKTNFLKPLPSSPCYSSNLSFHPKTHLFSRCPHGKRLDLRSCAVSGFDLGNFESVLEAAGVLTAIIV
VHESGHFLAAYLQGIHVSKFAVGFGPVLAKFSAKNVEYSLRAFPLGGFVGFPDNDPESDIPVDDENLLKNRPILDRTIVISAGVIANIIFAYAIIFVQVL
SVGLPVQEAFPGVLVPEVRAFSAASRDGLLPGDVILAVNGTNLPKIGPNAVSEVVGVIKSSPKKNVLLKVGRGKQDFEIGVTPDESFDGTGKIGVQLSPN
VKITKVVAKNILEAFNFAGKEFLGLSSNVVDSLKQTFLNFSQSASKVSGPVAIIAVGAEVARSNIDGLYQFAAVLNINLAVINLLPLPALDGGSLAFILI
EAARGGRKLPLEIEQRIMSSGIMLVILLGLFLIVRDTLNLDFIKDML

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G32480 ARASP ARABIDOPSIS SERIN PROTEASE (.1... Potri.014G154000
[exp]
0 1
AT1G28140 unknown protein Potri.001G100300
[exp]
1.41 0.9863
AT5G07900 Mitochondrial transcription te... Potri.001G035200
[exp]
1.41 0.9867
AT1G34000 OHP2 one-helix protein 2 (.1) Potri.002G065000
[exp]
2.00 0.9816 Lil6_1,OHP2.2
AT1G26220 Acyl-CoA N-acyltransferases (N... Potri.008G113600
[exp]
4.24 0.9838
AT3G27750 EMB3123 EMBRYO DEFECTIVE 3123, unknown... Potri.003G051400
[exp]
4.47 0.9803
AT4G09350 NdhT, CRRJ NADH dehydrogenase-like comple... Potri.013G109000
[exp]
5.74 0.9721
AT3G55800 SBPASE sedoheptulose-bisphosphatase (... Potri.010G193300
[exp]
6.32 0.9741
AT2G13360 SGAT, AGT1, AGT L-serine:glyoxylate aminotrans... Potri.001G253300
[exp]
7.74 0.9726 Pt-AGT.2
AT5G08050 Protein of unknown function (D... Potri.015G058600
[exp]
8.48 0.9714
AT2G33450 Ribosomal L28 family (.1) Potri.010G068500
[exp]
8.83 0.9766

Potri.014G154000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.