Plant FIBer expression Database

Potri.014G154200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G21990 358 / 6e-121 3-Apr, PRH-26, PRH26, ATAPR3, APR3 PAPS REDUCTASE HOMOLOG 26, APS reductase 3 (.1.2)
AT1G62180 350 / 1e-117 2-Apr, ATAPR2, APSR, PRH43, APR2 3'-PHOSPHOADENOSINE-5'-PHOSPHOSULFATE \(PAPS\) REDUCTASE HOMOLOG 43, ADENOSINE-5'-PHOSPHOSULFATE REDUCTASE, 5'adenylylphosphosulfate reductase 2 (.1.2)
AT4G04610 347 / 2e-116 1-Apr, PRH19, ATAPR1, APR1 PAPS REDUCTASE HOMOLOG 19, APS reductase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G012100
[exp]
367 / 3e-124 AT4G04610 697 / 0.0 PAPS REDUCTASE HOMOLOG 19, APS reductase 1 (.1)
Potri.004G011525
[exp]
197 / 1e-61 AT4G21990 340 / 9e-117 PAPS REDUCTASE HOMOLOG 26, APS reductase 3 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015560
[exp]
361 / 2e-122 AT4G21990 663 / 0.0 PAPS REDUCTASE HOMOLOG 26, APS reductase 3 (.1.2)
Lus10020040
[exp]
349 / 4e-117 AT4G04610 672 / 0.0 PAPS REDUCTASE HOMOLOG 19, APS reductase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0039 HUP PF01507 PAPS_reduct Phosphoadenosine phosphosulfate reductase family
Representative CDS sequence
>Potri.014G154200.2 pacid=42763294 polypeptide=Potri.014G154200.2.p locus=Potri.014G154200 ID=Potri.014G154200.2.v4.1 annot-version=v4.1
ATGTTTTCTCATGATCATGACCCTTCATGCTGCAGACGCTTGTGGCAGTCGAGGTTCACTGCCAGCTTCTTCTGTTCAGTATCTTTCCATGAGATCAAAG
GTCACTGCCTTGTGTTTTTCTTCTTTTTCGGTATGTTCAGACCAAAAGAGATAACTGAGAAGGCTGAACTTGAAGGTGTAACAGAAGATCATGGCAAGCT
GGCAAAAGAACTTGAGAAAGCTTCTCCTCTAGCAATTATCAACAAGGCCCTTCAAGATTTTATAGATGGCAGCGCCATTTCTTTCAGTGGAGCTGAGGAT
GTGTCTTTGATACTCCAATCGGGGGTGTTTGGCCTGGACACAGGGAGGTTGAACTCACAGACCGACAAACTCTTGGATGATGTGGAGAAGTACTACGGCA
TGGACATTGAATACATGCACCAAGAATGCTGTCAAGTACTACAGGTGAGACCTCTTAGAAGGGCCCTTAAGGATCTTTGTGCTTGGATCACAGGCCAAAG
AAAAGATCAGTCTCCTGGCATTAGAGCTACTGTTCCTGTTCTGCAAATTGACCACCCATCAGTTGAAGGAATTGGGTGTGGAACCATCAGCCTCGTGAAG
TGGAACCCAGTGGAAAATTTGGGCGTCCAGGCTATATGGAACTTCCTCCGAACCATGAATGTGCCTGTTAATAGTTTGCATGCTTTAGGATATGTCTCAA
TTGGTTGTGAGACTTTAACCGGACCGGCCCTCCCCTGGCAGCATGAGAGAGAAGGGAGGTGGTGGTGGGAGGAGGGCAAGTTGAAGGAGTGTGGACTACA
TAAAGGAAATATGGAATCTGAAGATGCGCAAATCAGGGAGCACATAAATGGAGTTGTTTCCTTTACAAATGTAAATGACCCAATTGCTGATGTTTTCAAC
TCCCAAAACTTGACCTCTTTGAGCAGGGCTGGGATGGAAATTTTAGGCACGTTAGAGAACAGATCTGGGCCTTGGCGTCACTTTTGCCAGGCCATGGAAG
ATTCATATGTAGAGTTGGCAGCTAAGCTGGTGAATGCTAAGGTCAAGATTGGGAAGTTCAGGGTAGATGGTGAGCACAAGGCAAATGCAAAGCAGAAACT
TCAGCCCAGGAGCTTTACCACTACAGTAATTTTCCCTGCCTCCAGGCCTATCAAATATTCCTCGGAGAAAAGGGACATTGATTCACAGTTAGCTTTTGTC
AATTCGCTTCAATGGTGA
AA sequence
>Potri.014G154200.2 pacid=42763294 polypeptide=Potri.014G154200.2.p locus=Potri.014G154200 ID=Potri.014G154200.2.v4.1 annot-version=v4.1
MFSHDHDPSCCRRLWQSRFTASFFCSVSFHEIKGHCLVFFFFFGMFRPKEITEKAELEGVTEDHGKLAKELEKASPLAIINKALQDFIDGSAISFSGAED
VSLILQSGVFGLDTGRLNSQTDKLLDDVEKYYGMDIEYMHQECCQVLQVRPLRRALKDLCAWITGQRKDQSPGIRATVPVLQIDHPSVEGIGCGTISLVK
WNPVENLGVQAIWNFLRTMNVPVNSLHALGYVSIGCETLTGPALPWQHEREGRWWWEEGKLKECGLHKGNMESEDAQIREHINGVVSFTNVNDPIADVFN
SQNLTSLSRAGMEILGTLENRSGPWRHFCQAMEDSYVELAAKLVNAKVKIGKFRVDGEHKANAKQKLQPRSFTTTVIFPASRPIKYSSEKRDIDSQLAFV
NSLQW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G21990 3-Apr, PRH-26, ... PAPS REDUCTASE HOMOLOG 26, APS... Potri.014G154200
[exp]
0 1
AT5G48850 ATSDI1 SULPHUR DEFICIENCY-INDUCED 1, ... Potri.002G240700
[exp]
1.00 0.9051
AT3G47570 Leucine-rich repeat protein ki... Potri.013G133100
[exp]
3.87 0.8587
AT3G19000 2-oxoglutarate (2OG) and Fe(II... Potri.004G146000
[exp]
10.58 0.7720
AT5G36930 Disease resistance protein (TI... Potri.006G283400
[exp]
24.67 0.7615
AT2G15080 AtRLP19 receptor like protein 19 (.1.2... Potri.011G104600
[exp]
25.27 0.7918
AT4G29990 Leucine-rich repeat transmembr... Potri.019G094600
[exp]
27.78 0.8294
AT4G29990 Leucine-rich repeat transmembr... Potri.019G094700
[exp]
29.12 0.7920
Potri.004G011450
[exp]
29.84 0.7779
AT3G28890 AtRLP43 receptor like protein 43 (.1.2... Potri.010G009750
[exp]
31.63 0.7753
AT5G36930 Disease resistance protein (TI... Potri.006G282600
[exp]
32.03 0.7652

Potri.014G154200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.