Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32500 314 / 5e-108 Stress responsive alpha-beta barrel domain protein (.1) AT2G31670 60 / 2e-10 Stress responsive alpha-beta barrel domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G125701 [exp] 52 / 1e-07 AT2G31670 257 / 6e-86 Stress responsive alpha-beta barrel domain protein (.1) Potri.001G413500 [exp] 50 / 4e-07 AT2G31670 241 / 2e-79 Stress responsive alpha-beta barrel domain protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031544 [exp] 296 / 3e-97 AT1G05100 298 / 3e-97 mitogen-activated protein kinase kinase kinase 18 (.1) Lus10015134 [exp] 248 / 2e-83 AT2G32500 191 / 2e-61 Stress responsive alpha-beta barrel domain protein (.1) Lus10017873 [exp] 45 / 2e-05 AT2G31670 258 / 4e-87 Stress responsive alpha-beta barrel domain protein (.1) Lus10034659 [exp] 45 / 2e-05 AT2G31670 264 / 2e-89 Stress responsive alpha-beta barrel domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0032 [poplar] [flax] Dim_A_B_barrel PF07876 [poplar] [flax] Dabb Stress responsive A/B Barrel Domain
Representative CDS sequence Show only first row Show all	>Potri.014G154900.1 pacid=42764453 polypeptide=Potri.014G154900.1.p locus=Potri.014G154900 ID=Potri.014G154900.1.v4.1 annot-version=v4.1 ATGCCCCTTGAAGCCCTTACATCGACCGCCCCTTCCTTTCCCAGTTTTCGCCGCCAAAACCCCACCACTCTTTCCTGCCATGTTTCTTTTGACGTTTCAG GATTGAATACGAGGAGGAATCGGACGACGAAGGTTACGGCTGGTTCTAAAGTCGAGAGCTCGAGCTTCCCTTTGGAGAAAAAGAGAAAAGTTGTGGAACA CGTGTGTCTGCTCAAAGCAAAGAAGTTTTTGTCTGATGAGGATGAGAAAGATATGCTGGATTATCTGTATACTTCCCAATATCAAATGCGTGGAATTGTT GCAGTTTCTTTGGGACGAATCTCCGACGACAATGTGGAGAATTATACTCATGCTGTTTTCATGCGTTTCCAAACAAAGGAAGATGTTACAAGGTTCTATG AGAACCCTTTCTATTTGAAAGTTTTGAAGGAGCATGTAATGCCTTATTGCCATGATTTAGTTAATGTGGATTATGAATCGGAAGTTGAAGATGATATGAT TCCTATATTTCGTAAAGGAGAGGAGTTCAACTATGGTGAGGAGTTTGTGCATCTATTTGCATTTGATGACAGCGCATTAGGTGCACCTGTGGAAGATGCA TTGGCATCTCTTGAAAAGTTGAAAAAAGAGTTTCCGTCCTTAATTGTCCAATCTACTCAAGGTTCAAATTTTAATCTCAGCAGCAAAGAATATACACATG CTGTAGTGACAAGATTTCGATCATCTGAGGCCTTTGAGATATTCGTGGGTAGCACTGAATACAGAGATGTGTGGAGGTCGAAATTCGAGCTGATCACCCG GAAAACACTTCCCATTCATTTCTCTGTTGATCCAGTGGGCAAGGAGGTTATGTAG
AA sequence Show only first row Show all	>Potri.014G154900.1 pacid=42764453 polypeptide=Potri.014G154900.1.p locus=Potri.014G154900 ID=Potri.014G154900.1.v4.1 annot-version=v4.1 MPLEALTSTAPSFPSFRRQNPTTLSCHVSFDVSGLNTRRNRTTKVTAGSKVESSSFPLEKKRKVVEHVCLLKAKKFLSDEDEKDMLDYLYTSQYQMRGIV AVSLGRISDDNVENYTHAVFMRFQTKEDVTRFYENPFYLKVLKEHVMPYCHDLVNVDYESEVEDDMIPIFRKGEEFNYGEEFVHLFAFDDSALGAPVEDA LASLEKLKKEFPSLIVQSTQGSNFNLSSKEYTHAVVTRFRSSEAFEIFVGSTEYRDVWRSKFELITRKTLPIHFSVDPVGKEVM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32500			Stress responsive alpha-beta b...		Potri.014G154900 [exp]	0	1
AT4G17740			Peptidase S41 family protein (...		Potri.008G173900 [exp]	1.41	0.9788
AT5G19940			Plastid-lipid associated prote...		Potri.006G276400 [exp]	2.00	0.9804
AT3G23760			unknown protein		Potri.018G096056 [exp]	2.23	0.9643
AT5G01920		STN8	State transition 8, Protein ki...		Potri.016G138500 [exp]	4.89	0.9661
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Potri.002G186300 [exp]	8.24	0.9464
AT1G35340			ATP-dependent protease La (LON...		Potri.013G105500 [exp]	9.48	0.9675
AT1G74470			Pyridine nucleotide-disulphide...		Potri.012G068801 [exp]	13.22	0.9605
AT3G61470		LHCA2	photosystem I light harvesting...		Potri.003G171500 [exp]	13.85	0.9614	LHCA2.1,Lhca2-2
AT5G44600			S-adenosyl-L-methionine-depend...		Potri.001G073000 [exp]	15.19	0.9584
AT1G61520		LHCA3*1, LHCA3*...	photosystem I light harvesting...		Potri.014G172400 [exp]	16.49	0.9599	LHCA3*1.1,Lhca3

Compare expression of checked genes

Potri.014G154900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.