Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MAPKKK15.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05100 317 / 4e-107 MAPKKK18 mitogen-activated protein kinase kinase kinase 18 (.1) AT2G32510 314 / 1e-105 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1) AT5G55090 311 / 2e-103 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT4G26890 280 / 2e-91 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT1G07150 217 / 2e-66 MAPKKK13 mitogen-activated protein kinase kinase kinase 13 (.1.2) AT3G50310 204 / 3e-63 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT2G30040 208 / 4e-63 MAPKKK14 mitogen-activated protein kinase kinase kinase 14 (.1) AT5G67080 201 / 1e-61 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT4G36950 186 / 6e-56 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT1G54960 189 / 4e-55 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G228200 [exp] 526 / 0 AT2G32510 321 / 2e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Potri.004G007700 [exp] 353 / 7e-120 AT5G55090 321 / 2e-105 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.011G007400 [exp] 351 / 2e-118 AT5G55090 326 / 3e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.003G130000 [exp] 229 / 1e-72 AT5G55090 232 / 2e-72 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.009G073200 [exp] 222 / 3e-68 AT1G07150 360 / 9e-120 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.001G278600 [exp] 220 / 8e-68 AT1G07150 353 / 2e-117 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.005G139200 [exp] 203 / 2e-62 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.007G044800 [exp] 199 / 4e-61 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139300 [exp] 189 / 5e-57 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030042 [exp] 333 / 4e-112 AT2G32510 324 / 2e-108 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10035284 [exp] 327 / 5e-110 AT2G32510 319 / 9e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10031544 [exp] 295 / 6e-96 AT1G05100 298 / 3e-97 mitogen-activated protein kinase kinase kinase 18 (.1) Lus10022951 [exp] 273 / 2e-88 AT4G26890 325 / 3e-107 mitogen-activated protein kinase kinase kinase 16 (.1) Lus10021551 [exp] 271 / 4e-87 AT5G55090 326 / 7e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Lus10034060 [exp] 190 / 7e-55 AT3G06030 730 / 0.0 NPK1-related protein kinase 3 (.1) Lus10010519 [exp] 190 / 9e-55 AT3G06030 726 / 0.0 NPK1-related protein kinase 3 (.1) Lus10012668 [exp] 183 / 1e-54 AT3G50310 347 / 5e-119 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10015185 [exp] 187 / 1e-53 AT1G09000 692 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Lus10021766 [exp] 177 / 2e-49 AT5G66850 452 / 7e-148 mitogen-activated protein kinase kinase kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.014G155000.1 pacid=42762321 polypeptide=Potri.014G155000.1.p locus=Potri.014G155000 ID=Potri.014G155000.1.v4.1 annot-version=v4.1 ATGGACTGGACTAGAGGGCACACCATAGGCCGCGGCTCCACGGCTACAGTTTCCGTCGCCACCTCTATTCAATCTGGTGATGTTTTCGCCGTGAAGTCCG TCGAGCTATCTCAGTCTGGATTCTTGCAAAGGGAGCAAAAGATCCTCTCTTCTATAATCTCTCCTTTTATAGTTAGCTACAAGGGGTGCGACGTTACTAG AAAGAACAACAAAGTCATGTACAATCTCTTCTTGGAGTACATGCCCAACGGCTCGCTTAGCAATGCGATTCATGCTCATGATGGAGGTCAGCTCGACGAA TCATTGATCAGGATTTTCACGTATCAAATCTTGCAAGGTCTAGATTACTTACACTTGAACGGTTTGGTGCATTGTGACATTAAGAGCAGCAACATTTTAG TAGCTCAAAGTGGTGCCAAGATTGCGGACTTCGGGTGTGCAAAGCGTGTGGAACAACAGGGACCGATCGCTGGCACGCCAATGTTTATGGCACCGGAGGT GGCGCGTGGAGAGGAGCAGGGGTTTGCTAGCGATATATGGGCTTTAGGATGCACAATTATTGAAATGGCTAGCGGCGGTACACCTTGGCATAACGTCAGC GACCCGGTCTCCATCATTTACCGGGCAGGGTATTCGGGTCACTTGCCAGAGTTCCCCTGTTGTCTGTCGGAACAAGCAAGGGATTTCTTGGACAAGTGTC TAAGGAGGGACCCAAAAGAGAGGTGGACCGCTAGCCAACTTCTTGAGCATCCGTTTTTGGTTGGAGAATTGAACAAGCAAATTGAAGAATCTAATCCAAC CTCGACTTCTCCTACAAGCATTCTTGATCAAGGAATTTGGAATTCACTGGATGAATCAGAAAGTCTGGAGAGCCTGGTCTTGGTCCCTTCAGGTAGTGAA AGTTCAGCCGGTGAGAGGATCAGAGGGCTGTCCCTGCTTTCAGGGGCACCTAGTTGGGACTGTGATGATCAGAACTGGATCACGGCCAGGGAGGATGGCT GTGAGGAAGGTGATACAGTGACGGATGACATTGAATACAAAGATTAA
AA sequence Show only first row Show all	>Potri.014G155000.1 pacid=42762321 polypeptide=Potri.014G155000.1.p locus=Potri.014G155000 ID=Potri.014G155000.1.v4.1 annot-version=v4.1 MDWTRGHTIGRGSTATVSVATSIQSGDVFAVKSVELSQSGFLQREQKILSSIISPFIVSYKGCDVTRKNNKVMYNLFLEYMPNGSLSNAIHAHDGGQLDE SLIRIFTYQILQGLDYLHLNGLVHCDIKSSNILVAQSGAKIADFGCAKRVEQQGPIAGTPMFMAPEVARGEEQGFASDIWALGCTIIEMASGGTPWHNVS DPVSIIYRAGYSGHLPEFPCCLSEQARDFLDKCLRRDPKERWTASQLLEHPFLVGELNKQIEESNPTSTSPTSILDQGIWNSLDESESLESLVLVPSGSE SSAGERIRGLSLLSGAPSWDCDDQNWITAREDGCEEGDTVTDDIEYKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05100		MAPKKK18	mitogen-activated protein kina...		Potri.014G155000 [exp]	0	1	MAPKKK15.2
AT4G36750			Quinone reductase family prote...		Potri.007G029600 [exp]	3.00	0.7762
AT3G03000			EF hand calcium-binding protei...		Potri.003G095700 [exp]	8.71	0.7890
AT4G08330			unknown protein		Potri.014G197000 [exp]	10.53	0.7930
AT1G78530			Protein kinase superfamily pro...		Potri.001G380800 [exp]	11.22	0.6838
AT1G80610			unknown protein		Potri.001G313900 [exp]	21.00	0.6778
AT4G20300			Protein of unknown function (D...		Potri.003G157500 [exp]	21.90	0.7356
AT5G60760			P-loop containing nucleoside t...		Potri.009G009200 [exp]	23.45	0.7488
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Potri.017G148800 [exp]	24.16	0.7017
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Potri.001G159900 [exp]	25.98	0.7361	Pt-QRT3.4
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Potri.001G027000 [exp]	33.40	0.7058

Compare expression of checked genes

Potri.014G155000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.