Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32520 409 / 4e-146 alpha/beta-Hydrolases superfamily protein (.1) AT1G35420 43 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035287 [exp] 434 / 5e-155 AT2G32520 424 / 4e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10030039 [exp] 421 / 1e-150 AT2G32520 425 / 5e-153 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.014G155200.1 pacid=42764456 polypeptide=Potri.014G155200.1.p locus=Potri.014G155200 ID=Potri.014G155200.1.v4.1 annot-version=v4.1 ATGTTACTGTTCACAGGCAGAGTGATCTCAGACTCATCATCATCAGCTTCCAGAATCTTCGCCGCCGCCAGTAGAAATCCCTTCTCCATCTCCGGTTCAC GCTTTCAAGTTCGTGCAATGGCCGGATCTGCGTCTCAACCTTTCAAGAAAATCCAAATCCAGAGAGACGATACTACATTTGATGCATATGTTGTCGGGAA AGAAGATGCTCCTGGTATTGTTGTACTTCAAGAGTGGTGGGGTGTCGATTTCGAGATCAAGAACCATGCTGTCAAAATCTCCCAACTTGGCCCTGGATTC AAGGCCCTTATTCCAGATTTGTATCGAGGAAAGGTCGGTTTGGACGTTGCTGAAGCTCAGCATTTGATGGATGGTCTTGATTGGCAAGGTGCTGTCAAGG ATATCCAGGCTTCGGTTAATTGGCTCAAGACAAATGGTTCAAGCAAGGCTGGAGTAACTGGATTTTGCATGGGGGGTGCTCTCTCTATTGCAAGTTCTGT TCTGGTTCCTGAGGTTGATGCTGTTGTTGCATTCTATGGTGTTCCTTCATCGCAGCTCGCTGACCCTGCTCAGGCTAAGGCACCTGTTCAGGCTCATTTT GGAGAGCTTGATAATTTTGTTGGCTTTTCAGATGTTACGGCTGCCAAGGCTCTGGAGGAAAAGCTGAAAGCATCAGGAATTCCATATGAGGTGCACATTT ATCCAGGCAATGCACATGCTTTCATGAACAGGTCTCCAGAAGGTGTGATGAGGAGGAAGGGCATGGGGCTGCCTGATGAGGATGAAGCTTCTGCTGAGTT GGCTTGGTCCCGATTCACAACATGGATGACCCGTTACTTATCTGCATAA
AA sequence Show only first row Show all	>Potri.014G155200.1 pacid=42764456 polypeptide=Potri.014G155200.1.p locus=Potri.014G155200 ID=Potri.014G155200.1.v4.1 annot-version=v4.1 MLLFTGRVISDSSSSASRIFAAASRNPFSISGSRFQVRAMAGSASQPFKKIQIQRDDTTFDAYVVGKEDAPGIVVLQEWWGVDFEIKNHAVKISQLGPGF KALIPDLYRGKVGLDVAEAQHLMDGLDWQGAVKDIQASVNWLKTNGSSKAGVTGFCMGGALSIASSVLVPEVDAVVAFYGVPSSQLADPAQAKAPVQAHF GELDNFVGFSDVTAAKALEEKLKASGIPYEVHIYPGNAHAFMNRSPEGVMRRKGMGLPDEDEASAELAWSRFTTWMTRYLSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32520			alpha/beta-Hydrolases superfam...		Potri.014G155200 [exp]	0	1
AT4G27745			Yippee family putative zinc-bi...		Potri.001G085400 [exp]	1.41	0.8074
AT3G23910			unknown protein		Potri.001G317900 [exp]	1.41	0.7987
AT5G47310			PPPDE putative thiol peptidase...		Potri.003G080300 [exp]	2.00	0.7529
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Potri.003G118400 [exp]	3.46	0.7857
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Potri.009G115000 [exp]	8.94	0.7335	Pt-ACT2.1
AT1G20460			unknown protein		Potri.002G013000 [exp]	9.94	0.7300
AT4G38800		ATMTN1, ATMTAN1	ARABIDOPSIS METHYLTHIOADENOSIN...		Potri.004G167200 [exp]	10.19	0.7379
AT3G08890			Protein of unknown function, D...		Potri.016G125300 [exp]	10.24	0.6924
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Potri.008G103400 [exp]	10.39	0.7338
AT2G43070		ATSPPL3	ARABIDOPSIS THALIANA SIGNAL PE...		Potri.002G232200 [exp]	11.66	0.7061

Compare expression of checked genes

Potri.014G155200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.