Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32540 710 / 0 ATCSLB4, ATCSLB04 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) AT2G32530 694 / 0 ATCSLB3, ATCSLB03 cellulose synthase-like B3 (.1) AT2G32620 658 / 0 ATCSLB2, ATCSLB02 CELLULOSE SYNTHASE LIKE B2, cellulose synthase-like B (.1) AT4G15290 631 / 0 ATCSLB5, ATCSLB05 CELLULOSE SYNTHASE LIKE 5, Cellulose synthase family protein (.1) AT2G32610 624 / 0 ATCSLB1, ATCSLB01 CELLULOSE SYNTHASE LIKE B1, cellulose synthase-like B1 (.1) AT4G15320 528 / 5e-177 ATCSLB6, ATCSLB06 CELLULOSE SYNTHASE LIKE B6, cellulose synthase-like B6 (.1) AT5G17420 452 / 2e-145 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT4G32410 444 / 4e-142 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT5G05170 444 / 4e-142 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT2G25540 438 / 7e-140 CESA10 cellulose synthase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G227300 [exp] 1246 / 0 AT2G32540 712 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Potri.006G251900 [exp] 439 / 8e-140 AT4G32410 1899 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.018G103900 [exp] 436 / 2e-139 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.006G181900 [exp] 436 / 4e-139 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.018G029400 [exp] 436 / 7e-139 AT4G32410 1898 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.016G054900 [exp] 434 / 2e-138 AT5G05170 1754 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.004G059600 [exp] 431 / 4e-138 AT4G18780 1655 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Potri.011G069600 [exp] 426 / 4e-136 AT4G18780 1658 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Potri.002G066600 [exp] 424 / 2e-134 AT4G39350 1655 / 0.0 cellulose synthase A2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030035 [exp] 848 / 0 AT2G32540 669 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Lus10018902 [exp] 442 / 6e-141 AT4G32410 1915 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10028597 [exp] 441 / 7e-141 AT4G32410 1922 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10012198 [exp] 437 / 4e-139 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007538 [exp] 437 / 5e-139 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10039607 [exp] 434 / 5e-138 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10029245 [exp] 416 / 3e-132 AT4G18780 1659 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10007296 [exp] 415 / 8e-132 AT4G18780 1671 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10006161 [exp] 413 / 2e-130 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10016625 [exp] 399 / 7e-128 AT1G55850 801 / 0.0 cellulose synthase like E1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03552 [poplar] [flax] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Potri.014G155300.1 pacid=42764509 polypeptide=Potri.014G155300.1.p locus=Potri.014G155300 ID=Potri.014G155300.1.v4.1 annot-version=v4.1 ATGGCCAATGCAATCTCTCCGCCCAATTTATTCCAGAAAGTTGTTCTTAAATACCCTATACACAGAGCCTTCGACATTACCATCTTCTTCCTTCTCGTAT CTCTCCTCGTTTATCGTCTTCTCTATCTCAGCAACCATGGATTTGCTTGGGTTCTCGCTCTCCTATGTGAGTCATGCTTTACCTTCATCTGGGTTGTCAC TGTCAGTTGCAAATGGAATCCAGTGGAATACAAAACATACCCAGAACGACTTTCACAAAAGGCACAAGATCTTCCTCCTGTGGATATGTTTGTGACAAGT GCAGACCCGGTGCTAGAACCGTCAATACTCACTGTAAACACAGTCATATCCTTATTGGCAGTTGACTATCCAGCAGATAAACTAGCTTGCTATGTATCGG ATGATGGTTGCTCCCCTATAACCTATTATTCTCTTGTTGAAGCATCCAAGTTTGCTAAGATTTGGGTTCCATTTTGCAAGAAGTATAACATTCAAACTAG AGCTCCTTTCAGATACTTTTCCAGTGAGCTCATTTTAACCGGCAGTTGTAATTCCTTGGAATTCCAGCAAGAATACAACAAGATGAAGGATGAGTATGAG GAGCTTGCCTCCAAAATCAAAGATGCAGTCGAAAAATCCATGGAGTGGGATCAAATCGGTGATTTTGCCATCTTCTCGAATATAGAGCGCAAAAACCACC CGACTATAATCAAGGTTATAAGGGAGAATGAGGCTGGACTTTCAGATGCGTTGCCGCATTTAATTTACATATCAAGAGAGAAGAGGCCAAAGCATCCAAA TCGCTATAAAGCAGGTGCCATGAACGTATTGACCAGAGTCTCTGGATTGATAACAAATGCTCCATTCATGTTGAACGTGGACTGCGATATGTTCGTCAAC AATCCACAGATTTTTCTCCATGCAATGTGTCTTTTACTTGGTTCCAAGAATGAAAGGGAAAGCGGGTTTGTTCAGTGTCCACAATATTTCTATGATGGAC TAAAGGATGATCCATTTGGGAACCAGTTCGTGGTTGGGCACAAATTCATGGGGAATGGAGTAGCTGGGATTCAAGGACCTTTTTATGGAGGAACAGGATG TTTTCACAGAAGAAAAGTCATTTATGGTTCATGTCCCGATGACATAGGAAATCAAGCAAAACGTCTCACTCCAGTTCATGGTGGTTTATCATACAAGGAG CAGCTAAGAATATTTGGCGATTCAAAGGAGTTTATCAGATCAGCTGCTCATGCACTACAAGGGAAGGAAAATATCAGTCCTAAAAATCTTCCAAACTTAG TTGAGGCAGCACACCAGGTTGCTGGTTGTGGCTACGAGTACGGTACTAGCTGGGGGACAGAGGTGGGTTGGCAATATGGATCCGCAACAGAAGACGTCCT CACTGGATTGATGATCCATGCTAGGGGCTGGAGGTCCCTTCTTTGCACGCCGGATCCTCGTGCCTTTTTGGGGTGTGCCCCTCGTGGCGGACCGATCTCG ATGACCCAGCAAAAGAGGTGGGCAACAGGTTTTCTTGAAATATTGATCAGCAGAAGAAGCCCCATTATTGCCACAGTTACTGCCAAACTCCAGTTTAGAC AGTGTTTGGCGTATCTCTCGTTGCTTACTTGGGGGTTACGCTCTATTCCTGAGCTTTGCTCCGCGGTGTTGCCAGCTTATTGTACCATCACCGACTCGAG TTTCCTGCCCGAGGTGCATGAGCCAGCCATATATATTTACATGGCCCTTTTCCTGAGTTACGTCATCTACACTCTAATAGAGTACCTCGAAACTGGATTG TCAATCCGTGCATGGTGGAATAACCAAAGGATGGCAAGAATAAATGCAATGAATGCATGGTTATTTGGATTTATAAGTGTAATCTTGAAGGTTTTAAGAA TATCAGATACAGTTTTTGAAGTTACACAAAAAGACCAATCTTCAAGTAATGATGGCGATGAAGGCAGGTTCACCTTCGATGCTTCGCTGCTTTTTGTGCC TGGGACAACCGTTCTGCTGCTGCAACTCACGGCATTGATCATGGGATTCCGAGGCATGCAACTATCAGTTAACGATGGCTCAGGGCTGGGAGAGAGATTG TGTAGCATAATGGTGGTCATATGCTTCTGGCCATTTCTGAAAGGCCTGTTTGCAAAAGGAAAATATGGGATTCCTCTGTCCACAATATTCAAGTCAGCTT TTTTGGCATTATGTTTTGTGCTCTTGGCCAAGCGTGCATGA
AA sequence Show only first row Show all	>Potri.014G155300.1 pacid=42764509 polypeptide=Potri.014G155300.1.p locus=Potri.014G155300 ID=Potri.014G155300.1.v4.1 annot-version=v4.1 MANAISPPNLFQKVVLKYPIHRAFDITIFFLLVSLLVYRLLYLSNHGFAWVLALLCESCFTFIWVVTVSCKWNPVEYKTYPERLSQKAQDLPPVDMFVTS ADPVLEPSILTVNTVISLLAVDYPADKLACYVSDDGCSPITYYSLVEASKFAKIWVPFCKKYNIQTRAPFRYFSSELILTGSCNSLEFQQEYNKMKDEYE ELASKIKDAVEKSMEWDQIGDFAIFSNIERKNHPTIIKVIRENEAGLSDALPHLIYISREKRPKHPNRYKAGAMNVLTRVSGLITNAPFMLNVDCDMFVN NPQIFLHAMCLLLGSKNERESGFVQCPQYFYDGLKDDPFGNQFVVGHKFMGNGVAGIQGPFYGGTGCFHRRKVIYGSCPDDIGNQAKRLTPVHGGLSYKE QLRIFGDSKEFIRSAAHALQGKENISPKNLPNLVEAAHQVAGCGYEYGTSWGTEVGWQYGSATEDVLTGLMIHARGWRSLLCTPDPRAFLGCAPRGGPIS MTQQKRWATGFLEILISRRSPIIATVTAKLQFRQCLAYLSLLTWGLRSIPELCSAVLPAYCTITDSSFLPEVHEPAIYIYMALFLSYVIYTLIEYLETGL SIRAWWNNQRMARINAMNAWLFGFISVILKVLRISDTVFEVTQKDQSSSNDGDEGRFTFDASLLFVPGTTVLLLQLTALIMGFRGMQLSVNDGSGLGERL CSIMVVICFWPFLKGLFAKGKYGIPLSTIFKSAFLALCFVLLAKRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Potri.014G155300 [exp]	0	1
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Potri.006G277300 [exp]	6.40	0.9983
AT5G03620			Subtilisin-like serine endopep...		Potri.009G145600 [exp]	10.67	0.9963
AT4G35160			O-methyltransferase family pro...		Potri.013G136300 [exp]	12.60	0.9982
AT2G33420			Protein of unknown function (D...		Potri.010G068000 [exp]	13.49	0.9259
AT4G35160			O-methyltransferase family pro...		Potri.013G141301 [exp]	14.56	0.9982
AT4G35160			O-methyltransferase family pro...		Potri.013G143800 [exp]	16.27	0.9982
AT5G05130			DNA/RNA helicase protein (.1)		Potri.016G033450 [exp]	16.52	0.9857
AT5G50690		ATHSD7	hydroxysteroid dehydrogenase 7...		Potri.012G101900 [exp]	19.44	0.9981
AT4G24340			Phosphorylase superfamily prot...		Potri.019G050200 [exp]	20.78	0.9981
AT3G23550			MATE efflux family protein (.1...		Potri.011G117400 [exp]	21.63	0.9981

Compare expression of checked genes

Potri.014G155300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.