Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HPL1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15440 507 / 4e-179 CYP74B2, HPL1 hydroperoxide lyase 1 (.1) AT5G42650 374 / 7e-125 CYP74A, AOS, DDE2 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) AT3G20110 64 / 8e-11 CYP705A20 "cytochrome P450, family 705, subfamily A, polypeptide 20", cytochrome P450, family 705, subfamily A, polypeptide 20 (.1) AT3G20120 61 / 7e-10 CYP705A21 "cytochrome P450, family 705, subfamily A, polypeptide 21", cytochrome P450, family 705, subfamily A, polypeptide 21 (.1.2) AT4G15330 60 / 2e-09 CYP705A1 "cytochrome P450, family 705, subfamily A, polypeptide 1", cytochrome P450, family 705, subfamily A, polypeptide 1 (.1) AT4G15360 60 / 2e-09 CYP705A3 "cytochrome P450, family 705, subfamily A, polypeptide 3", cytochrome P450, family 705, subfamily A, polypeptide 3 (.1) AT2G27010 59 / 5e-09 CYP705A9 "cytochrome P450, family 705, subfamily A, polypeptide 9", cytochrome P450, family 705, subfamily A, polypeptide 9 (.1) AT3G20100 57 / 2e-08 CYP705A19 "cytochrome P450, family 705, subfamily A, polypeptide 19", cytochrome P450, family 705, subfamily A, polypeptide 19 (.1) AT5G36220 57 / 2e-08 CYP91A1, CYP81D1 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) AT1G13710 56 / 5e-08 CYP78A5, KLUH KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G109700 [exp] 375 / 1e-125 AT5G42650 479 / 2e-166 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.002G130700 [exp] 370 / 2e-123 AT5G42650 693 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148900 [exp] 366 / 2e-122 AT5G42650 499 / 2e-174 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G149000 [exp] 359 / 1e-119 AT5G42650 492 / 3e-171 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.014G038700 [exp] 360 / 2e-119 AT5G42650 658 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148600 [exp] 322 / 2e-105 AT5G42650 442 / 3e-152 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.001G270500 [exp] 69 / 4e-12 AT1G12740 443 / 1e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270404 [exp] 68 / 6e-12 AT1G12740 443 / 9e-153 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.009G064800 [exp] 68 / 7e-12 AT1G12740 452 / 2e-156 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030029 [exp] 662 / 0 AT4G15440 481 / 3e-169 hydroperoxide lyase 1 (.1) Lus10031540 [exp] 645 / 0 AT4G15440 467 / 3e-163 hydroperoxide lyase 1 (.1) Lus10035289 [exp] 621 / 0 AT4G15440 443 / 2e-154 hydroperoxide lyase 1 (.1) Lus10030033 [exp] 611 / 0 AT4G15440 442 / 7e-154 hydroperoxide lyase 1 (.1) Lus10030032 [exp] 572 / 0 AT4G15440 423 / 2e-146 hydroperoxide lyase 1 (.1) Lus10015138 [exp] 565 / 0 AT4G15440 378 / 2e-128 hydroperoxide lyase 1 (.1) Lus10018791 [exp] 361 / 9e-120 AT5G42650 615 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10021019 [exp] 355 / 7e-118 AT5G42650 474 / 6e-164 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10021015 [exp] 347 / 1e-114 AT5G42650 468 / 7e-162 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10035295 [exp] 280 / 9e-92 AT4G15440 253 / 4e-83 hydroperoxide lyase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.014G155800.2 pacid=42763663 polypeptide=Potri.014G155800.2.p locus=Potri.014G155800 ID=Potri.014G155800.2.v4.1 annot-version=v4.1 ATGGCCATGGGCACGATGATGAACTGCCGAATGATGAGCATATCTCCAGGCATGCCGTCATCATCACCCCCTACTCAGTCTCCAGCACCCGCTTCCCTCC CACTCCGTACAATCCCTGGATCATACGGCTGGCCTTTGTTAGGACCCATCTCAGACAGGCTAGACTACTTCTGGTTCCAGGGTCCTGATACCTTCTTCAA GAAACGCATTGACAAGTACAAGTCCACTGTGTTCCGCACAAATGTGCCTCCAACATTTCCCTTCTTTGCTGGGGTCAATCCGAACGTTGTAGCAGTTCTT GATACCAAGTCCTTTGCTTATCTTTTTGACATGGATATTGTGGAGAAGAAGAACATCCTTGTCGGTGAGTTCATGCCTAGTGTAAAGTTCACTGGGAATA TCAGGACTTGTGCTTATCTTGATACCTCTGAGCCACAACATACTCAGCTTAAAAACTTTGCCATGGGCGTCTTGAAACGCAGCTCCAAGGTCTGGCTCTC CGAGCTTGTAGCCAGCCTCGACACGATGTGGGACACCATTGACACTGATGTCTCTCAAAAGGGCAGTGTAAGCTACCTGCTTCCTCTCCAGCAAGCCTTG TTTAGGTTCTTGGTGAAGTCCCTAGCTGGGGCTGACCCGTCAAACTCACCTGAAATTGCTGAGGGTGGCTACGCAATGCTGGACAAGTGGCTTGCTCTCC AGCTCCTTCCCACTATCAAAATTGGTATCCTGCAACCTCTGGAGGAAATTTTCCTACACTCTTTCTCCTACCCTTTTTTCCTTGTTAGTGGAGACTACAA CAAGTTATACCAGTTCATAAAAAATGAAGCTAAAGAATTGTTACGCTATGCCGAGACTGAATTCGGACTGAATCAAGAAGAAACCATCCATAACCTGCTA TTCATTATAGGATTCAATGCGTTTGGAGGGTTTTCTATATTTCTACCCGGTCTAATAAGCAGAATAGTAAGTGACACCGCATTACAAGAAAAACTGCGCG ATGAAGTCAGACAAAATGCTGGTCCAAGTTTATCTTTCGAGTCAGTGATGAAAATGCCACTGGTTCAATCAGTTGTTTATGAAACACTTCGACTCAGCCC ACCTGTTCCCCTTCAATTTGCAAGAGCTAGGAAAGACTTTCAACTGAGCTCACACGACTCAGTTTTTGACATAAAAAAAGGCGAGCTGCTATGTGGGTAT CAACCCTTGGTGATGAGAGACGCTGAAGTTTTTGATGATCCAGAGAGTTTTAGAGCAGACAGGTTTATGGGTGAAGAAGGGAGAGAATTACTGAATTACT TGTACTGGTCAAATGGGCCGCAGACGGGGTCACCAAGTGAGTCGAATAAACAATGTGCAGCCAAGGATTATGTGACCCTCACTGGTTCTATGATGGTGGC TTATTTGTTGAAGAGGTATGATTCTATTACGGGAGACTCTGCTTCAATCACAGCTGTTGAAAAGGCTGTTAAGTGA
AA sequence Show only first row Show all	>Potri.014G155800.2 pacid=42763663 polypeptide=Potri.014G155800.2.p locus=Potri.014G155800 ID=Potri.014G155800.2.v4.1 annot-version=v4.1 MAMGTMMNCRMMSISPGMPSSSPPTQSPAPASLPLRTIPGSYGWPLLGPISDRLDYFWFQGPDTFFKKRIDKYKSTVFRTNVPPTFPFFAGVNPNVVAVL DTKSFAYLFDMDIVEKKNILVGEFMPSVKFTGNIRTCAYLDTSEPQHTQLKNFAMGVLKRSSKVWLSELVASLDTMWDTIDTDVSQKGSVSYLLPLQQAL FRFLVKSLAGADPSNSPEIAEGGYAMLDKWLALQLLPTIKIGILQPLEEIFLHSFSYPFFLVSGDYNKLYQFIKNEAKELLRYAETEFGLNQEETIHNLL FIIGFNAFGGFSIFLPGLISRIVSDTALQEKLRDEVRQNAGPSLSFESVMKMPLVQSVVYETLRLSPPVPLQFARARKDFQLSSHDSVFDIKKGELLCGY QPLVMRDAEVFDDPESFRADRFMGEEGRELLNYLYWSNGPQTGSPSESNKQCAAKDYVTLTGSMMVAYLLKRYDSITGDSASITAVEKAVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Potri.014G155800 [exp]	0	1	HPL1.1
AT5G13770			Pentatricopeptide repeat (PPR-...		Potri.010G098700 [exp]	3.00	0.9566
AT1G08465	YABBY	YAB2	YABBY2, Plant-specific transcr...		Potri.009G000100 [exp]	4.47	0.9542
AT5G38510			Rhomboid-related intramembrane...		Potri.017G112900 [exp]	5.91	0.9481
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.018G088500 [exp]	6.00	0.9500
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.005G069100 [exp]	7.54	0.9370
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Potri.017G028800 [exp]	8.12	0.9449	NS1.2
AT1G74470			Pyridine nucleotide-disulphide...		Potri.012G068801 [exp]	8.24	0.9571
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Potri.017G030100 [exp]	10.48	0.9358
AT4G28080			Tetratricopeptide repeat (TPR)...		Potri.018G102500 [exp]	10.95	0.9409
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Potri.018G089400 [exp]	11.83	0.9365

Compare expression of checked genes

Potri.014G155800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.