Plant FIBer expression Database

Potri.014G155900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G32590 669 / 0 EMB2795 EMBRYO DEFECTIVE 2795, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030028
[exp]
685 / 0 AT2G32590 721 / 0.0 EMBRYO DEFECTIVE 2795, unknown protein
Lus10031539
[exp]
675 / 0 AT2G32590 659 / 0.0 EMBRYO DEFECTIVE 2795, unknown protein
Lus10035296
[exp]
664 / 0 AT2G32590 706 / 0.0 EMBRYO DEFECTIVE 2795, unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05786 Cnd2 Condensin complex subunit 2
Representative CDS sequence
>Potri.014G155900.1 pacid=42762264 polypeptide=Potri.014G155900.1.p locus=Potri.014G155900 ID=Potri.014G155900.1.v4.1 annot-version=v4.1
ATGGGAGAAATTCTAAGCCCTAAGCAGAGACTCCCCAGGATTCAATCCCCAACTTCCCCTTTCTTCTTAGGCTCCAACGACGACAACCTCGAGCGTGCTC
AGGCACGCGCCGCCCGCGCCGCCGCTATCCGCCGCAAGACTATCGCCGCTCACTCTCAACCACCGCCTCTCCAAGATCCAGATCCCTGCCTCGACAAGCA
GCAGATCCTCGATCTCTTCCATAATTGCATAAAACTCGCCAGCGAGAATAAAATAAATCAAAAGAACACATGGGAATTGAATTTGATTGACCATCTCGCC
GAGATCATCAAGGTCGAAGAAGAAAGTGATACTGAGACCAATTTCCAAAAGGCGAGTTGTACCCTAGAAGCTGGTGTTAAAATCTACTCATTAAGGGTAG
ATTCTGTGCATTCAGAGGCGTATAAGGTGCTTGGTGGGATTAATAGAGCTGGTCTTGAAGATGAACCAGGTACTGTGGATGGTGTTAATGCTGACAATGG
ACACGAGGAAAGCCATTCGAAAAAAGAGACTGAGAAAAAGATGTCACCTTTGTCAACATTGGAGCCGTCTTTTGAAGCTCTTAATGTAAAGAAGTTTGAT
GTTGCATTTGCTGTGGATCCTTTGTATCATCAGACATCTGCACAATTCGATGAAGGTGGAGCCAAGGGTCTTTTATTGAACAATCTTGGAGTGTATGGTG
GATGTCGAGTGCTTTTTGATTCACAAGAAGTACCGGGGAAGTGCACATCATGTGAAAATCAGCGTGAAGGGCTTGATATGATTGAGCTTTCTTTCGCTAG
AGATTACATTGAACAAATGGTACTGAACATGCGGACACAGGATGAAATTTCGCCAACTCTTGGGACTATAGTCGATCAATTTGATGAAGACAACAAAAGG
CCATTAAATATTTTTCCATGTCACCAGACATGCGGTGACCAATTTCATGAAGATGATAGAACTTATAATAATGAAGTTGAGTTCGATGGTGAAACACATG
AGAATTGTGGACCCTGGAATGTAGATCAAGATGACCAAAGAAGTGTGATTGATGAGGACCCCATTGGTGCAGATACAACTTTTCCAAGTTATCATGAGGA
AAGAGAGCCACATTTGTTCGATAACCCAGATACGGATGACAGATTTGACAAAGTTGATTGGCCATTGTTTTTGAGTTTGGGATTTACATCAAAACGAAAT
GATTGGGCAGGTCCTGATCATTGGAAGTATCAGAAAGTTAAAGAGGATCCTTCTACTACAGAAGAAGGATCACCAGTAATAACTAAGAGACCAAAGACCA
AGAAGAAAACAGAAGTTGATATTGATTTCACAAAAGCCTTGGATGAAGAAATGCCTGATGTCTTTGCTCCTCCCAAAAATGCGAAGTCATTACTTCTACC
TGCAAATAGACCACAGTGTAATACAACACTGCCAGAAGATTGCCATTACCAGCCTGAGGATCTTGCTAAGTTGTTTCTTCTACCTAATATAATGTGCCTT
GGGAAGAGAAGAAAAAAGTTTTCAGATGAAACGAGGCAACAGGCAGATGATTGTGGACCACTGCCATCATGGGATGGTGAAAGTGCCTTTGCTGGCCAAT
TTGATGATGGAGATGCCTATAGTGACGTGGAAGACCCCAACACACTCGTTACCCAGCCTCGCCAGGTAAATAAAATCGAAGTACACTATGACAAGGCTTC
TAAGCAAGTTGATGTCCAGACACTAAAGGAAACTCTTTGGCACCACATACAAGAATCTCCCCAAATGCCTGTCCAGGATCAAGAAGAGGCAGTGTCTTTC
AGGGATCTCTTGGCTAGTTTTCCTAGTGATTGCAGAGCTGCTGCAACTATAAAGGAGATTTCTCCTCATTTGTGTTTCATATGCCTATTACATTTGGCTA
ATGAACATGGCTTGAGCATCCGTGGTTGTGCCGGCTTAAATGATCTCAGCATACATTTTCCTCAATGA
AA sequence
>Potri.014G155900.1 pacid=42762264 polypeptide=Potri.014G155900.1.p locus=Potri.014G155900 ID=Potri.014G155900.1.v4.1 annot-version=v4.1
MGEILSPKQRLPRIQSPTSPFFLGSNDDNLERAQARAARAAAIRRKTIAAHSQPPPLQDPDPCLDKQQILDLFHNCIKLASENKINQKNTWELNLIDHLA
EIIKVEEESDTETNFQKASCTLEAGVKIYSLRVDSVHSEAYKVLGGINRAGLEDEPGTVDGVNADNGHEESHSKKETEKKMSPLSTLEPSFEALNVKKFD
VAFAVDPLYHQTSAQFDEGGAKGLLLNNLGVYGGCRVLFDSQEVPGKCTSCENQREGLDMIELSFARDYIEQMVLNMRTQDEISPTLGTIVDQFDEDNKR
PLNIFPCHQTCGDQFHEDDRTYNNEVEFDGETHENCGPWNVDQDDQRSVIDEDPIGADTTFPSYHEEREPHLFDNPDTDDRFDKVDWPLFLSLGFTSKRN
DWAGPDHWKYQKVKEDPSTTEEGSPVITKRPKTKKKTEVDIDFTKALDEEMPDVFAPPKNAKSLLLPANRPQCNTTLPEDCHYQPEDLAKLFLLPNIMCL
GKRRKKFSDETRQQADDCGPLPSWDGESAFAGQFDDGDAYSDVEDPNTLVTQPRQVNKIEVHYDKASKQVDVQTLKETLWHHIQESPQMPVQDQEEAVSF
RDLLASFPSDCRAAATIKEISPHLCFICLLHLANEHGLSIRGCAGLNDLSIHFPQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G32590 EMB2795 EMBRYO DEFECTIVE 2795, unknown... Potri.014G155900
[exp]
0 1
AT2G33560 BUBR1 BUB1-related (BUB1: budding un... Potri.005G258300
[exp]
1.41 0.9731
AT5G65120 unknown protein Potri.007G090500
[exp]
1.73 0.9654
AT5G06590 unknown protein Potri.016G064200
[exp]
3.87 0.9585
AT1G72670 IQD8 IQ-domain 8 (.1) Potri.003G042700
[exp]
4.47 0.9695
AT5G60930 P-loop containing nucleoside t... Potri.002G106100
[exp]
6.32 0.9647
AT5G05240 Uncharacterised conserved prot... Potri.019G058200
[exp]
6.48 0.9533
Potri.001G407200
[exp]
7.74 0.9640
AT4G17240 unknown protein Potri.006G017200
[exp]
8.66 0.9507
AT3G60660 unknown protein Potri.014G060000
[exp]
9.48 0.9503
AT3G03130 unknown protein Potri.013G081600
[exp]
9.94 0.9619

Potri.014G155900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.