Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15420 732 / 0 Ubiquitin fusion degradation UFD1 family protein (.1) AT2G29070 113 / 1e-27 Ubiquitin fusion degradation UFD1 family protein (.1.2) AT4G38930 113 / 2e-27 Ubiquitin fusion degradation UFD1 family protein (.1.2) AT2G21270 109 / 4e-26 UFD1 ubiquitin fusion degradation 1 (.1.2.3) AT1G09920 64 / 1e-11 TRAF-type zinc finger-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G124900 [exp] 110 / 2e-26 AT2G21270 485 / 4e-174 ubiquitin fusion degradation 1 (.1.2.3) Potri.004G163200 [exp] 108 / 1e-25 AT2G21270 487 / 7e-175 ubiquitin fusion degradation 1 (.1.2.3) Potri.001G242200 [exp] 102 / 8e-24 AT2G29070 403 / 6e-142 Ubiquitin fusion degradation UFD1 family protein (.1.2) Potri.002G109800 [exp] 64 / 3e-11 AT1G09920 273 / 1e-94 TRAF-type zinc finger-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015140 [exp] 813 / 0 AT4G15420 809 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1) Lus10031538 [exp] 797 / 0 AT4G15420 708 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1) Lus10018057 [exp] 106 / 7e-25 AT2G21270 480 / 2e-171 ubiquitin fusion degradation 1 (.1.2.3) Lus10042053 [exp] 102 / 2e-23 AT2G21270 420 / 4e-148 ubiquitin fusion degradation 1 (.1.2.3) Lus10004970 [exp] 102 / 2e-23 AT2G21270 330 / 8e-113 ubiquitin fusion degradation 1 (.1.2.3) Lus10029298 [exp] 70 / 2e-12 AT2G29070 195 / 7e-59 Ubiquitin fusion degradation UFD1 family protein (.1.2) Lus10001575 [exp] 66 / 1e-11 AT2G21270 259 / 3e-85 ubiquitin fusion degradation 1 (.1.2.3) Lus10042917 [exp] 64 / 2e-11 AT1G09920 257 / 4e-88 TRAF-type zinc finger-related (.1) Lus10028213 [exp] 61 / 2e-10 AT1G09920 256 / 2e-87 TRAF-type zinc finger-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0402 [poplar] [flax] Cdc48_2-like PF03152 [poplar] [flax] UFD1 Ubiquitin fusion degradation protein UFD1
Representative CDS sequence Show only first row Show all	>Potri.014G156300.2 pacid=42762327 polypeptide=Potri.014G156300.2.p locus=Potri.014G156300 ID=Potri.014G156300.2.v4.1 annot-version=v4.1 ATGTTTAGAATGTTAATAGATGGACATGAGTCACACCACATAGTGCTTACATATGTATATGAGCACACTAGGAGATTCTCGTGTCTTGTTTTTCTTTTCC AAATTTATTTTTATTTTTATTTTGTTCAGATTAGAATGTTAATGGTCTTTTTTATGCTCAAAAGAAGTTGGTTTTCTCTTCAGGTTGATGAGCAAATGCA AGAAAATTTGCTTGCAGGGAGAGGAATAGTATTTTCTCGCATCCTAGAAGCTGTATCTTTTCAGGGTAGTGGAGATAAGATTAAATTACCTCCTTCTTGC TTCACAGGATTGTCTGATCAAGGTGCATTTGATAAAGGACCATTGTATTTCCAATTATCAGTGGTTCATCAAGAAGGTTCTTCAGAGATGATTGACACTG ACTCAAAGCAGTCGACGACCCACTCAGGTGTTCTTGAGTTTACTGCAGAAGAGGGTTCAGTAGGGCTTCCTCCTCATGTATGGAGTAACCTCTTTCCCAT AGATTCTCCAAAGGCTCCTTTGATTGAGGTTCAGTATGTCTGGCTGCCTAAAGGAACTTATGCAAAGCTTCAGCCAGATGTTGTTGGGTTTTCAGACTTG CCCAATCATAAGGCTGTACTTGAAACAAGCCTTCGGCAACATGCTACGCTTTCTGAAGGTGATGTGATCACTGTCAACCATGGGATACTGACATACAAGT TACAGGTTCTGGAGTTGAGACCTTCGTCGAGTGTCTCTGTCTTGGAAACAGATATTGAGGTTGATGTTGTTGGTCCAGATTCAGGTCTGGAGAGCAGTCA ACCTGTGCTGAAGCCTCTTATATTTGGGAAGGCAGAATCTGGGATGGTGGAAGAAGGAAACTATAACTATTTTAAATTCTCTATTGATAATGATATTTGG GACAGAATTGCTGCTGAGGATGTTAGGGTCGAGGTAAGGATAGAGGCCGAGACCAATAATGGCGATACTGATCTTTACATGTCAAAGCATCCTCTTATGT TTCCAACCAGACACCAACATGAATGGTCTTCTCATGATATAGGTTCAAAAGTTTTGATACTTGGCTCTAAGGATAAGAACTTGGGAATGGGTGCTTACAG CATTGGTGTGCATGGTTTCAAAGGAACAACAAAGTACAATGTAGCAGTGAGTGTTCAAGAGAATAGCAACCACAAGGTGGGTCAACAAGCTGGATCTTCA TCATCTATGGACATTGATGCTGTAGAGTGTAGGAACTGCAAGCATTTTATACCCAGCAGAAGTATAGCATTGCACGAAGCCTTCTGTAGCAGACATAATA TTGTTTGTTCACATCCTGGCTGTGGAATTGTTCTGAGGATTGAAGAGTCCAAAAACCATTTGCACTGTGACAAATGTGGGCAAGCTTTTCAACAGGGTGA AATGGAGAAGCACATGAAAGTTTTCCATGAACCACTTCAATGCCCATGTGGGGTGGTCCTTGAAAAGAACCAGATGGTACAACACCAGGCTTCAATCTGT CCCGTCCGTCTTATTACATGCCGGTTTTGTGGTGACATGGTTCAAGCTGGGACTTCAGCTATGGATGTGCGTGATCGATTGAGAGGATTAACTGAGCATG AGAGTGTTTGTGGATCTAGAACTGCTCCATGCGACTCTTGTGGACGATCAGTGATGTTGAAGGAGATGGACATACACCAAATTGCTGTCCATCAAAAAAG TTGA
AA sequence Show only first row Show all	>Potri.014G156300.2 pacid=42762327 polypeptide=Potri.014G156300.2.p locus=Potri.014G156300 ID=Potri.014G156300.2.v4.1 annot-version=v4.1 MFRMLIDGHESHHIVLTYVYEHTRRFSCLVFLFQIYFYFYFVQIRMLMVFFMLKRSWFSLQVDEQMQENLLAGRGIVFSRILEAVSFQGSGDKIKLPPSC FTGLSDQGAFDKGPLYFQLSVVHQEGSSEMIDTDSKQSTTHSGVLEFTAEEGSVGLPPHVWSNLFPIDSPKAPLIEVQYVWLPKGTYAKLQPDVVGFSDL PNHKAVLETSLRQHATLSEGDVITVNHGILTYKLQVLELRPSSSVSVLETDIEVDVVGPDSGLESSQPVLKPLIFGKAESGMVEEGNYNYFKFSIDNDIW DRIAAEDVRVEVRIEAETNNGDTDLYMSKHPLMFPTRHQHEWSSHDIGSKVLILGSKDKNLGMGAYSIGVHGFKGTTKYNVAVSVQENSNHKVGQQAGSS SSMDIDAVECRNCKHFIPSRSIALHEAFCSRHNIVCSHPGCGIVLRIEESKNHLHCDKCGQAFQQGEMEKHMKVFHEPLQCPCGVVLEKNQMVQHQASIC PVRLITCRFCGDMVQAGTSAMDVRDRLRGLTEHESVCGSRTAPCDSCGRSVMLKEMDIHQIAVHQKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15420			Ubiquitin fusion degradation U...		Potri.014G156300 [exp]	0	1
AT3G10020			unknown protein		Potri.013G014300 [exp]	6.55	0.9397
AT1G07400			HSP20-like chaperones superfam...		Potri.004G187400 [exp]	8.83	0.9376
AT5G59720		HSP18.2 HSP18.1...	heat shock protein 18.2 (.1)		Potri.008G062300 [exp]	11.35	0.9365	HSP18.2
AT4G02890		UBQ14	Ubiquitin family protein (.1.2...		Potri.017G135600 [exp]	14.31	0.9349	Pt-SUBI.8
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.010G206600 [exp]	14.38	0.9167
AT1G03070			Bax inhibitor-1 family protein...		Potri.005G214000 [exp]	14.83	0.9351
AT5G59720		HSP18.2 HSP18.1...	heat shock protein 18.2 (.1)		Potri.006G093500 [exp]	15.29	0.9345	HSP18.1
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Potri.006G226800 [exp]	17.94	0.9341
AT1G53540			HSP20-like chaperones superfam...		Potri.001G339150 [exp]	20.19	0.9337
AT2G29500			HSP20-like chaperones superfam...		Potri.004G187450 [exp]	20.34	0.9332

Compare expression of checked genes

Potri.014G156300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.