Plant FIBer expression Database

Potri.014G156600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G226300
[exp]
68 / 7e-17 AT1G05065 40 / 1e-05 CLAVATA3/ESR-RELATED 20 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.014G156600.1 pacid=42762674 polypeptide=Potri.014G156600.1.p locus=Potri.014G156600 ID=Potri.014G156600.1.v4.1 annot-version=v4.1
ATGAAACTCTTTCACCTCTTCCTCTTGCTTGCTCTTCTCATTTTCTTTAGCAGTACTCCTAGGAGTAGTCACGCAGCTCGCAGGAGCTTCTCTGCACCTT
CCACAAGCCAGCAGGTTTTTCGCTCCCCGTTCAGAGCTTCACCGTTTGCAGAAAGAGCTAAAGAATTCGAGTCACAGAAGCGAAAGGTTCCTACAGGCTC
GAATCCATTGCATAACAAGCGATAA
AA sequence
>Potri.014G156600.1 pacid=42762674 polypeptide=Potri.014G156600.1.p locus=Potri.014G156600 ID=Potri.014G156600.1.v4.1 annot-version=v4.1
MKLFHLFLLLALLIFFSSTPRSSHAARRSFSAPSTSQQVFRSPFRASPFAERAKEFESQKRKVPTGSNPLHNKR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G05065 CLE20 CLAVATA3/ESR-RELATED 20 (.1) Potri.014G156600
[exp]
0 1
AT5G41460 Protein of unknown function (D... Potri.015G106101
[exp]
3.16 0.8830
AT1G02630 Nucleoside transporter family ... Potri.018G130000
[exp]
5.29 0.8197
AT5G51810 AT2353, GA20OX2... gibberellin 20 oxidase 2 (.1) Potri.012G132400
[exp]
5.47 0.8703 Pt-GA20.1,GA20ox6
AT3G57620 glyoxal oxidase-related protei... Potri.013G034900
[exp]
9.53 0.8107
AT5G66815 unknown protein Potri.014G034500
[exp]
10.95 0.8118
AT5G48540 receptor-like protein kinase-r... Potri.002G249600
[exp]
12.00 0.7754
AT1G34220 Regulator of Vps4 activity in ... Potri.013G117100
[exp]
12.64 0.7343
AT4G32810 MAX4, CCD8, ATC... MORE AXILLARY BRANCHING 4, car... Potri.018G044100
[exp]
14.42 0.8070
AT2G44745 WRKY WRKY12 WRKY family transcription fact... Potri.002G138900
[exp]
15.19 0.7802
AT4G35300 TMT2 tonoplast monosaccharide trans... Potri.005G255400
[exp]
15.29 0.7401

Potri.014G156600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.