Plant FIBer expression Database

Potri.014G156700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G05060 342 / 6e-120 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035303
[exp]
358 / 6e-126 AT1G05060 306 / 9e-106 unknown protein
Lus10030021
[exp]
330 / 6e-115 AT1G05060 276 / 7e-94 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G156700.1 pacid=42763519 polypeptide=Potri.014G156700.1.p locus=Potri.014G156700 ID=Potri.014G156700.1.v4.1 annot-version=v4.1
ATGAGTTTTCTAGCGGGAAGATTAGCAGGAAAAGAAGGAGCCTTCTTTTTCCAGGAATCCAAACATGCCGTTAACCGCCTCGCAGAGAAATCAGCCACCA
CCGTCAAGAACCTCCCACCCCCCTCCTCCTCCTCTACAATAGAGCACGAATCCCAAGCCGACGTGCTTCCCGAGGTCTTAAGACATTCTCTTCCTTCCAA
GATCTTCGGCAAGCCGTACGAACCGTCTTCTCTGTCCACATCATCCAAGTGGGCCCTACGATCTGATCATCCAAATAGTAGTTCAACCGTGTCCCCTGAT
GTTCTCAATCCTCTCCGAGCTTATGTTTCCCTCCCTCAGGTCACTTTTGGTCCCAAAAGATGGGAATTGCCGAGCGAGGAGCACTCGGTACTGGCGTCGA
CGGCGAATGAAATGCGAAAAGACAGATATACCACTATTAATCCCGATAAATTGAAGGCCGCAGCCGAGGGGCTTACTTATATTGGGAAGGCATTTGCGGT
TGCAACTGCAATTGTGTTTGGTGGCGCCACTCTGGTATTTTCCTTGGCAGCGTCCAAGCTAGACCTCCGTAATGGTGGTGATATCCGAACTAAAGGGAAA
GACCTGGTTCAGCCAAAACTTGATGTCATCAGAGAGCATTTTGTGCCTTTAAAAACTTGGGCGGAAGATACATCGAAGAAATGGCATCTTGATAGGCAGG
AAGACGTGAAAGAGAAACCTATGGTCAAGGAGCTTGCTAAAATTCTGGGCGCAAAAACTTCCAACTGA
AA sequence
>Potri.014G156700.1 pacid=42763519 polypeptide=Potri.014G156700.1.p locus=Potri.014G156700 ID=Potri.014G156700.1.v4.1 annot-version=v4.1
MSFLAGRLAGKEGAFFFQESKHAVNRLAEKSATTVKNLPPPSSSSTIEHESQADVLPEVLRHSLPSKIFGKPYEPSSLSTSSKWALRSDHPNSSSTVSPD
VLNPLRAYVSLPQVTFGPKRWELPSEEHSVLASTANEMRKDRYTTINPDKLKAAAEGLTYIGKAFAVATAIVFGGATLVFSLAASKLDLRNGGDIRTKGK
DLVQPKLDVIREHFVPLKTWAEDTSKKWHLDRQEDVKEKPMVKELAKILGAKTSN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G05060 unknown protein Potri.014G156700
[exp]
0 1
AT4G39100 SHL1 short life, PHD finger family ... Potri.009G121000
[exp]
5.09 0.8329 SHL1.1
AT4G32090 Beta-1,3-N-Acetylglucosaminylt... Potri.009G129400
[exp]
8.12 0.7543
AT5G37290 ARM repeat superfamily protein... Potri.001G225300
[exp]
13.63 0.7947
AT3G61600 ATPOB1 POZ/BTB containin G-protein 1 ... Potri.014G093700
[exp]
19.59 0.7572 ATPOB1.1
AT3G25280 Major facilitator superfamily ... Potri.002G249100
[exp]
19.62 0.7836
AT2G36840 ACR10 ACT domain repeats 10, ACT-lik... Potri.011G154600
[exp]
22.91 0.7509
AT4G01280 MYB Homeodomain-like superfamily p... Potri.014G089300
[exp]
22.97 0.7692
AT1G01840 unknown protein Potri.014G077000
[exp]
23.23 0.7478
AT4G07950 DNA-directed RNA polymerase, s... Potri.012G015900
[exp]
23.66 0.7747
AT1G11120 unknown protein Potri.019G103800
[exp]
28.84 0.7662

Potri.014G156700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.