Plant FIBer expression Database

Potri.014G156800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G32640 798 / 0 Lycopene beta/epsilon cyclase protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031537
[exp]
842 / 0 AT2G32640 783 / 0.0 Lycopene beta/epsilon cyclase protein (.1.2)
Lus10015143
[exp]
488 / 5e-170 AT2G32640 434 / 4e-152 Lycopene beta/epsilon cyclase protein (.1.2)
Lus10015142
[exp]
340 / 1e-114 AT2G32640 308 / 6e-103 Lycopene beta/epsilon cyclase protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.014G156800.1 pacid=42763319 polypeptide=Potri.014G156800.1.p locus=Potri.014G156800 ID=Potri.014G156800.1.v4.1 annot-version=v4.1
ATGTTGATGGTTCAGCTTGGACAGTGCAATGGGGTACTGGGTCAGTACCCAAAGCTGAGCCCTTTGGTTCGGAGAAGAAAGGAGAGGATTCAAAGGAGCA
TGTCTTTGCAAGCACAAGCTCTTCCCTCTAGAACCCAGAGGATAATGGAGAGTATTGCAGTTGAAGGTGAAGTTGGTGGTGCTGGTGGGGCTTACTCATA
TAATGCCTTAAAGAGGTTGGACCATATTTGGTCTAGTATCTGCTCCACTGTAACAGTTTCTCAACAGCCTCAGCAAGTTGTTTCGAGTATTCCAGGAGTG
TCAAGCCATTCTGATCTCACTGGCAAAGTGGTTGATAAATTTGACGTGGTAGTTTGTGGAGGTACTTTGGGAATATTCATTGCCACAGCCTTGAGTGCCA
AAGGTCTTCAAGTAGGCGTTGTGGAAAGAAACATACTAAAAGGGAGGGAGCAAGAATGGAATATCTCAAGGAAGGAGCTGTTGGAGCTTGTAGATGTTGG
AATTCTGGAAGAGAATGACATTGAACAAGCTATAGCTATGAACTTTAATCCTAATAGATGTGGCTTTGAGGATAAGGGCGAAATCTGGGTCAAAGACATT
CTTAATCTTGGTGTTTCACCTGTGAAGCTCATAGAGATTGTGAAGAAACGTTTTATTTCCCTTGGTGGAGTCATCTTTGAAGGCTGCAGTGTCTCCAGCA
TCTCTATATATGAGGATGCATCAGTCTTGCAACTGGCGGAGGGGAACATTCTGTCATCTCGACTCATTATTGATGCAATGGGGAACTTTTCACCCGTGGT
AAAACAGATAAGGAGAGGAAAGAAGCCAGATGGTGTTTGCCTTGTTGTTGGATCTTGTGCTCGTGGTTTTAAAGATAACTCTGCCAGTGATATCATATAT
AGTAGTTCATCTGTAAAGAAGGTTGGCGATTCCGAAGCACAATACTTCTGGGAGGCATTTCCAGCTGGATCTGGTCCTTTGGATCGTACTACATATATGT
TCACTTATGTCAGTCCTCAACCAGGATCGCCAAAATTAGAAGAATTGTTAGAAGACTTCTGGGACTTGATGCCAGAATATCAGGGAGTCTCTCTTGACAA
TCTGGAGATACTGAGAGTTATATATGGCATTTTCCCTACATATCGTGACAGTCCATTGCCTGCAGCATTTGATCGTATCTTACAGTTTGGGGATGCTAGT
GGCATCCAGTCACCTGTTTCATTTGGTGGTTTTGGAAGCTTGACAAGGCACCTTGGGAGATTGTCAGCAGGAGTATATGAAGCAATCAATGGAGATTTTC
TCGATGCATCCAGCCTGTCCCTCCTAAATCCTTACATGCCAAATTTAAGTGCTTCGTGGCTGTTTCAAAGAGCAATGTCAGCCAAGAAAAACTCTAATGT
TCCTCCAGAATTTATTAATGAGCTTCTTTATGTCAATTTCCAGAGCATGCAGAAGCTGGGGGATCCAGTTCTAAGACCATTTCTTCAGGATGTTATACAG
TTCTGGGCTCTTTCCAAGACATTAGGCCTTGTTATGCTAACTAAACCTCAGATCATCCCATCAATATTCAAGCAGGTTGGTATTCCTGTGCTTCTTGACT
GGTCCAGTCATTTCTTCATGCTGGGCTACTATACTTTTCTCTCCACCTATGCAGATCCAGTAATAAGACCATTCTTAACTGCATTTCCATCCAAGATGAA
GTATGAGTGGAAGCGGTATCTTGAGGCTTGGAAATATGGGTCTGGTTTAGATTATAAGCTGTAA
AA sequence
>Potri.014G156800.1 pacid=42763319 polypeptide=Potri.014G156800.1.p locus=Potri.014G156800 ID=Potri.014G156800.1.v4.1 annot-version=v4.1
MLMVQLGQCNGVLGQYPKLSPLVRRRKERIQRSMSLQAQALPSRTQRIMESIAVEGEVGGAGGAYSYNALKRLDHIWSSICSTVTVSQQPQQVVSSIPGV
SSHSDLTGKVVDKFDVVVCGGTLGIFIATALSAKGLQVGVVERNILKGREQEWNISRKELLELVDVGILEENDIEQAIAMNFNPNRCGFEDKGEIWVKDI
LNLGVSPVKLIEIVKKRFISLGGVIFEGCSVSSISIYEDASVLQLAEGNILSSRLIIDAMGNFSPVVKQIRRGKKPDGVCLVVGSCARGFKDNSASDIIY
SSSSVKKVGDSEAQYFWEAFPAGSGPLDRTTYMFTYVSPQPGSPKLEELLEDFWDLMPEYQGVSLDNLEILRVIYGIFPTYRDSPLPAAFDRILQFGDAS
GIQSPVSFGGFGSLTRHLGRLSAGVYEAINGDFLDASSLSLLNPYMPNLSASWLFQRAMSAKKNSNVPPEFINELLYVNFQSMQKLGDPVLRPFLQDVIQ
FWALSKTLGLVMLTKPQIIPSIFKQVGIPVLLDWSSHFFMLGYYTFLSTYADPVIRPFLTAFPSKMKYEWKRYLEAWKYGSGLDYKL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G32640 Lycopene beta/epsilon cyclase ... Potri.014G156800
[exp]
0 1
AT3G62910 APG3 ALBINO AND PALE GREEN, Peptide... Potri.014G133400
[exp]
4.58 0.8287 APG3.1
AT5G39940 FAD/NAD(P)-binding oxidoreduct... Potri.004G130000
[exp]
5.47 0.7454
AT5G15940 NAD(P)-binding Rossmann-fold s... Potri.001G453500
[exp]
9.94 0.7496
AT1G45110 Tetrapyrrole (Corrin/Porphyrin... Potri.005G232200
[exp]
11.91 0.8009
AT1G54570 Esterase/lipase/thioesterase f... Potri.005G046600
[exp]
12.40 0.7545
AT1G08980 ATTOC64-I, ATAM... ARABIDOPSIS THALIANA TRANSLOCO... Potri.013G024200
[exp]
16.24 0.7593
AT2G39190 ATATH8 Protein kinase superfamily pro... Potri.010G221000
[exp]
18.89 0.8009
Potri.008G195300
[exp]
26.51 0.6978
AT5G63520 unknown protein Potri.015G098700
[exp]
35.94 0.7226
AT3G59780 Rhodanese/Cell cycle control p... Potri.019G097901
[exp]
48.24 0.6501

Potri.014G156800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.